Hb_038862_010

Information

Type -
Description -
Location Contig38862: 126-725
Sequence    

Annotation

kegg
ID bvg:104883809
description uncharacterized LOC104883809
nr
ID XP_010666673.1
description PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCH2
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038862_010 0.0 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
2 Hb_012490_110 0.2001678766 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
3 Hb_136880_010 0.2065648214 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_004878_010 0.2184813523 - - -
5 Hb_000757_020 0.2246640761 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
6 Hb_155150_010 0.2249435463 - - kinase, putative [Ricinus communis]
7 Hb_012539_030 0.2252842581 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
8 Hb_001146_050 0.2252882863 - - -
9 Hb_000418_150 0.2300096279 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_004604_030 0.235000263 - - unnamed protein product [Coffea canephora]
11 Hb_007317_090 0.2377973673 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
12 Hb_146510_010 0.2385479481 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
13 Hb_000345_330 0.2388748695 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
14 Hb_167775_010 0.2416042589 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_005155_010 0.2417222519 - - amino acid transporter, putative [Ricinus communis]
16 Hb_000233_100 0.2428679358 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_029748_020 0.2441100799 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001391_100 0.2449317302 - - AMP dependent ligase, putative [Ricinus communis]
19 Hb_062229_010 0.2470186106 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_148800_010 0.2470677106 - - -

Gene co-expression network

sample Hb_038862_010 Hb_038862_010 Hb_012490_110 Hb_012490_110 Hb_038862_010--Hb_012490_110 Hb_136880_010 Hb_136880_010 Hb_038862_010--Hb_136880_010 Hb_004878_010 Hb_004878_010 Hb_038862_010--Hb_004878_010 Hb_000757_020 Hb_000757_020 Hb_038862_010--Hb_000757_020 Hb_155150_010 Hb_155150_010 Hb_038862_010--Hb_155150_010 Hb_012539_030 Hb_012539_030 Hb_038862_010--Hb_012539_030 Hb_000566_180 Hb_000566_180 Hb_012490_110--Hb_000566_180 Hb_001050_020 Hb_001050_020 Hb_012490_110--Hb_001050_020 Hb_012490_110--Hb_004878_010 Hb_002636_040 Hb_002636_040 Hb_012490_110--Hb_002636_040 Hb_002559_030 Hb_002559_030 Hb_012490_110--Hb_002559_030 Hb_121992_010 Hb_121992_010 Hb_136880_010--Hb_121992_010 Hb_001485_010 Hb_001485_010 Hb_136880_010--Hb_001485_010 Hb_012788_010 Hb_012788_010 Hb_136880_010--Hb_012788_010 Hb_001304_130 Hb_001304_130 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_151706_010 Hb_151706_010 Hb_136880_010--Hb_151706_010 Hb_001146_050 Hb_001146_050 Hb_004878_010--Hb_001146_050 Hb_007718_020 Hb_007718_020 Hb_004878_010--Hb_007718_020 Hb_004409_030 Hb_004409_030 Hb_004878_010--Hb_004409_030 Hb_005271_230 Hb_005271_230 Hb_004878_010--Hb_005271_230 Hb_049293_010 Hb_049293_010 Hb_000757_020--Hb_049293_010 Hb_003177_090 Hb_003177_090 Hb_000757_020--Hb_003177_090 Hb_000418_150 Hb_000418_150 Hb_000757_020--Hb_000418_150 Hb_000757_020--Hb_155150_010 Hb_000714_120 Hb_000714_120 Hb_000757_020--Hb_000714_120 Hb_000366_030 Hb_000366_030 Hb_000757_020--Hb_000366_030 Hb_001446_060 Hb_001446_060 Hb_155150_010--Hb_001446_060 Hb_029748_020 Hb_029748_020 Hb_155150_010--Hb_029748_020 Hb_001898_020 Hb_001898_020 Hb_155150_010--Hb_001898_020 Hb_000321_120 Hb_000321_120 Hb_155150_010--Hb_000321_120 Hb_000438_020 Hb_000438_020 Hb_155150_010--Hb_000438_020 Hb_002471_020 Hb_002471_020 Hb_012539_030--Hb_002471_020 Hb_000189_470 Hb_000189_470 Hb_012539_030--Hb_000189_470 Hb_001492_040 Hb_001492_040 Hb_012539_030--Hb_001492_040 Hb_087587_010 Hb_087587_010 Hb_012539_030--Hb_087587_010 Hb_122273_020 Hb_122273_020 Hb_012539_030--Hb_122273_020 Hb_159411_010 Hb_159411_010 Hb_012539_030--Hb_159411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110352 0.709626 0.101437 0.343669 0.0875351 0.452702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.325444 0.767883

CAGE analysis