Hb_002205_060

Information

Type -
Description -
Location Contig2205: 71124-73119
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22709: 67402-73295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_060 0.0 - - -
2 Hb_002783_060 0.1563486767 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
3 Hb_000810_020 0.1855112366 - - -
4 Hb_005679_070 0.1946733518 - - hypothetical protein M569_07741, partial [Genlisea aurea]
5 Hb_001260_030 0.1981972449 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000181_150 0.1983876527 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
7 Hb_026228_010 0.2064606522 - - conserved hypothetical protein [Ricinus communis]
8 Hb_168343_010 0.2135188015 - - sensory transduction histidine kinase, putative [Ricinus communis]
9 Hb_000160_160 0.2161413993 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
10 Hb_115477_010 0.2184600988 - - Protein dom-3, putative [Ricinus communis]
11 Hb_000329_560 0.22027878 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008447_030 0.2212049803 - - -
13 Hb_003688_110 0.2221989577 - - -
14 Hb_012627_020 0.2245207854 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
15 Hb_001998_140 0.2254916912 - - -
16 Hb_025190_010 0.2275511158 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007124_010 0.2284185461 - - unnamed protein product [Coffea canephora]
18 Hb_002960_050 0.2286918454 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
19 Hb_000656_090 0.2298702976 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
20 Hb_006846_140 0.2312284491 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002205_060 Hb_002205_060 Hb_002783_060 Hb_002783_060 Hb_002205_060--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_002205_060--Hb_000810_020 Hb_005679_070 Hb_005679_070 Hb_002205_060--Hb_005679_070 Hb_001260_030 Hb_001260_030 Hb_002205_060--Hb_001260_030 Hb_000181_150 Hb_000181_150 Hb_002205_060--Hb_000181_150 Hb_026228_010 Hb_026228_010 Hb_002205_060--Hb_026228_010 Hb_002783_060--Hb_000810_020 Hb_002960_050 Hb_002960_050 Hb_002783_060--Hb_002960_050 Hb_006846_140 Hb_006846_140 Hb_002783_060--Hb_006846_140 Hb_005085_030 Hb_005085_030 Hb_002783_060--Hb_005085_030 Hb_005731_140 Hb_005731_140 Hb_002783_060--Hb_005731_140 Hb_007124_010 Hb_007124_010 Hb_002783_060--Hb_007124_010 Hb_002482_060 Hb_002482_060 Hb_000810_020--Hb_002482_060 Hb_006198_090 Hb_006198_090 Hb_000810_020--Hb_006198_090 Hb_000810_020--Hb_005679_070 Hb_000810_020--Hb_005731_140 Hb_000810_020--Hb_005085_030 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_001260_030--Hb_002482_060 Hb_000436_080 Hb_000436_080 Hb_001260_030--Hb_000436_080 Hb_000120_190 Hb_000120_190 Hb_001260_030--Hb_000120_190 Hb_007763_060 Hb_007763_060 Hb_001260_030--Hb_007763_060 Hb_001260_030--Hb_001998_140 Hb_001260_030--Hb_006198_090 Hb_177103_010 Hb_177103_010 Hb_000181_150--Hb_177103_010 Hb_000181_150--Hb_005679_070 Hb_000181_150--Hb_002815_050 Hb_032258_020 Hb_032258_020 Hb_000181_150--Hb_032258_020 Hb_000181_150--Hb_000329_560 Hb_000160_160 Hb_000160_160 Hb_000181_150--Hb_000160_160 Hb_026228_010--Hb_000329_560 Hb_026228_010--Hb_005679_070 Hb_026228_010--Hb_001998_140 Hb_003688_110 Hb_003688_110 Hb_026228_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_026228_010--Hb_002200_050 Hb_026228_010--Hb_000810_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.277799 0.105098 0 0.918606 0.425553 3.81375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.909605 0.204179 0.694571 0.508364 1.15009

CAGE analysis