Hb_032258_020

Information

Type -
Description -
Location Contig32258: 8086-10033
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_008348349.1
description PREDICTED: amidase 1-like isoform X2 [Malus domestica]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005829
description amidase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34152: 9925-10060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032258_020 0.0 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
2 Hb_002815_050 0.1733350717 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
3 Hb_000181_150 0.1834792515 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
4 Hb_022891_010 0.1900516605 - - chitinase-like protein [Hevea brasiliensis]
5 Hb_003030_040 0.1974383098 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
6 Hb_007188_030 0.2065972253 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
7 Hb_177103_010 0.2078612264 - - PREDICTED: histone H2AX [Elaeis guineensis]
8 Hb_130367_010 0.2104837257 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
9 Hb_046120_010 0.2127584711 - - -
10 Hb_000084_130 0.2150879212 - - -
11 Hb_003656_150 0.2161828681 - - -
12 Hb_000034_090 0.2166344822 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
13 Hb_002636_150 0.2177464386 - - -
14 Hb_005679_070 0.2214510202 - - hypothetical protein M569_07741, partial [Genlisea aurea]
15 Hb_002079_040 0.2218752659 - - hypothetical protein VITISV_018542 [Vitis vinifera]
16 Hb_068014_010 0.2230269727 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
17 Hb_000098_300 0.2308650522 - - -
18 Hb_007083_020 0.2310572343 - - hypothetical protein F775_15403 [Aegilops tauschii]
19 Hb_169170_010 0.2326947547 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
20 Hb_010565_040 0.2330276595 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_032258_020 Hb_032258_020 Hb_002815_050 Hb_002815_050 Hb_032258_020--Hb_002815_050 Hb_000181_150 Hb_000181_150 Hb_032258_020--Hb_000181_150 Hb_022891_010 Hb_022891_010 Hb_032258_020--Hb_022891_010 Hb_003030_040 Hb_003030_040 Hb_032258_020--Hb_003030_040 Hb_007188_030 Hb_007188_030 Hb_032258_020--Hb_007188_030 Hb_177103_010 Hb_177103_010 Hb_032258_020--Hb_177103_010 Hb_005679_070 Hb_005679_070 Hb_002815_050--Hb_005679_070 Hb_002815_050--Hb_003030_040 Hb_002815_050--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_002815_050--Hb_003656_150 Hb_002815_050--Hb_022891_010 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_000181_150--Hb_177103_010 Hb_000181_150--Hb_005679_070 Hb_000181_150--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_000181_150--Hb_000329_560 Hb_000160_160 Hb_000160_160 Hb_000181_150--Hb_000160_160 Hb_130367_010 Hb_130367_010 Hb_022891_010--Hb_130367_010 Hb_000034_090 Hb_000034_090 Hb_022891_010--Hb_000034_090 Hb_022891_010--Hb_007188_030 Hb_000098_300 Hb_000098_300 Hb_022891_010--Hb_000098_300 Hb_022891_010--Hb_003030_040 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_003030_040--Hb_007188_030 Hb_003030_040--Hb_003656_150 Hb_005107_020 Hb_005107_020 Hb_003030_040--Hb_005107_020 Hb_003030_040--Hb_005679_070 Hb_007188_030--Hb_003656_150 Hb_006198_090 Hb_006198_090 Hb_007188_030--Hb_006198_090 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_005679_070 Hb_169170_010 Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_177103_010--Hb_006198_090 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_177103_010--Hb_068014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.459395 0.569633 4.12357 25.8837 0.457449 45.098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30128 4.61358 0.553443 10.9873 6.55175

CAGE analysis