Hb_000034_090

Information

Type transcription factor
Description TF Family: M-type
Location Contig34: 196200-196951
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10570g
description hypothetical protein
nr
ID CAX84162.1
description MPF2-like, partial [Dunalia fasciculata]
swissprot
ID Q9ATE5
description MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1
trembl
ID U5GPC1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s10570g PE=4 SV=1
Gene Ontology
ID GO:0003677
description k-box region and mads-box transcription factor family partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35479: 176881-196882
cDNA
(Sanger)
(ID:Location)		 008_B19.ab1: 177826-196884 , 019_C24.ab1: 177432-196882 , 052_H09.ab1: 177672-196884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_090 0.0 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
2 Hb_005107_020 0.1352657523 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
3 Hb_006162_020 0.1467304143 - - -
4 Hb_099298_010 0.1471660662 - - -
5 Hb_002079_040 0.1504268792 - - hypothetical protein VITISV_018542 [Vitis vinifera]
6 Hb_041601_010 0.1662405432 - - -
7 Hb_012675_080 0.1706392797 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
8 Hb_000953_120 0.1726195031 - - -
9 Hb_162090_010 0.1759725961 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
10 Hb_183522_010 0.1762443684 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_022891_010 0.1770609677 - - chitinase-like protein [Hevea brasiliensis]
12 Hb_011200_010 0.1789896561 - - -
13 Hb_022614_010 0.1827344033 - - -
14 Hb_003030_040 0.1872355723 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
15 Hb_002815_050 0.1907641957 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
16 Hb_017014_020 0.190828696 - - -
17 Hb_009083_030 0.1955299139 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
18 Hb_013394_100 0.1962203416 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
19 Hb_011037_020 0.1972115808 - - unknown [Picea sitchensis]
20 Hb_003656_150 0.1982509082 - - -

Gene co-expression network

sample Hb_000034_090 Hb_000034_090 Hb_005107_020 Hb_005107_020 Hb_000034_090--Hb_005107_020 Hb_006162_020 Hb_006162_020 Hb_000034_090--Hb_006162_020 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_041601_010 Hb_041601_010 Hb_000034_090--Hb_041601_010 Hb_012675_080 Hb_012675_080 Hb_000034_090--Hb_012675_080 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_162090_010 Hb_162090_010 Hb_006162_020--Hb_162090_010 Hb_022614_010 Hb_022614_010 Hb_006162_020--Hb_022614_010 Hb_017014_020 Hb_017014_020 Hb_006162_020--Hb_017014_020 Hb_183522_010 Hb_183522_010 Hb_006162_020--Hb_183522_010 Hb_013394_100 Hb_013394_100 Hb_099298_010--Hb_013394_100 Hb_188313_010 Hb_188313_010 Hb_099298_010--Hb_188313_010 Hb_011037_020 Hb_011037_020 Hb_099298_010--Hb_011037_020 Hb_099298_010--Hb_006162_020 Hb_182713_020 Hb_182713_020 Hb_099298_010--Hb_182713_020 Hb_002078_500 Hb_002078_500 Hb_002079_040--Hb_002078_500 Hb_002079_040--Hb_003030_040 Hb_002079_040--Hb_013394_100 Hb_002079_040--Hb_012675_080 Hb_002079_040--Hb_005107_020 Hb_000953_120 Hb_000953_120 Hb_041601_010--Hb_000953_120 Hb_000251_020 Hb_000251_020 Hb_041601_010--Hb_000251_020 Hb_041601_010--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_041601_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_041601_010--Hb_000025_080 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_012675_080--Hb_011037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09197 1.41648 3.40078 112.458 3.01742 77.4263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0629 12.0748 2.46572 12.792 7.58987

CAGE analysis