Hb_003688_110

Information

Type -
Description -
Location Contig3688: 62430-63710
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016791
description phosphoserine chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37973: 61218-61463 , PASA_asmbl_37975: 62562-81888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_110 0.0 - - -
2 Hb_025190_010 0.1282135308 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002200_050 0.1407759539 - - unknown [Lotus japonicus]
4 Hb_007763_060 0.1479584512 - - BnaA02g23510D [Brassica napus]
5 Hb_041205_010 0.1510087916 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004235_030 0.1527712225 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
7 Hb_005085_030 0.1603438666 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
8 Hb_029142_070 0.1607885897 - - -
9 Hb_005679_070 0.1608806525 - - hypothetical protein M569_07741, partial [Genlisea aurea]
10 Hb_000223_170 0.1619258927 - - -
11 Hb_026228_010 0.1642226815 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000710_070 0.1647587785 - - PREDICTED: uncharacterized protein LOC105645553 [Jatropha curcas]
13 Hb_002284_050 0.164961189 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
14 Hb_000810_020 0.1688369974 - - -
15 Hb_008447_030 0.1703091061 - - -
16 Hb_000641_020 0.1726197302 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
17 Hb_007763_050 0.1729893187 - - hypothetical protein L484_012752 [Morus notabilis]
18 Hb_001260_030 0.174096416 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002482_060 0.1746997842 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
20 Hb_025288_010 0.1761489587 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_003688_110 Hb_003688_110 Hb_025190_010 Hb_025190_010 Hb_003688_110--Hb_025190_010 Hb_002200_050 Hb_002200_050 Hb_003688_110--Hb_002200_050 Hb_007763_060 Hb_007763_060 Hb_003688_110--Hb_007763_060 Hb_041205_010 Hb_041205_010 Hb_003688_110--Hb_041205_010 Hb_004235_030 Hb_004235_030 Hb_003688_110--Hb_004235_030 Hb_005085_030 Hb_005085_030 Hb_003688_110--Hb_005085_030 Hb_025190_010--Hb_002200_050 Hb_002482_040 Hb_002482_040 Hb_025190_010--Hb_002482_040 Hb_000174_040 Hb_000174_040 Hb_025190_010--Hb_000174_040 Hb_026228_010 Hb_026228_010 Hb_025190_010--Hb_026228_010 Hb_029142_020 Hb_029142_020 Hb_025190_010--Hb_029142_020 Hb_000160_160 Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_006487_060 Hb_006487_060 Hb_007763_060--Hb_006487_060 Hb_008096_030 Hb_008096_030 Hb_007763_060--Hb_008096_030 Hb_152554_010 Hb_152554_010 Hb_007763_060--Hb_152554_010 Hb_028420_020 Hb_028420_020 Hb_007763_060--Hb_028420_020 Hb_168973_010 Hb_168973_010 Hb_007763_060--Hb_168973_010 Hb_002482_060 Hb_002482_060 Hb_007763_060--Hb_002482_060 Hb_098852_010 Hb_098852_010 Hb_041205_010--Hb_098852_010 Hb_002259_160 Hb_002259_160 Hb_041205_010--Hb_002259_160 Hb_000215_200 Hb_000215_200 Hb_041205_010--Hb_000215_200 Hb_082006_010 Hb_082006_010 Hb_041205_010--Hb_082006_010 Hb_002078_260 Hb_002078_260 Hb_041205_010--Hb_002078_260 Hb_000641_020 Hb_000641_020 Hb_041205_010--Hb_000641_020 Hb_002660_050 Hb_002660_050 Hb_004235_030--Hb_002660_050 Hb_004235_030--Hb_028420_020 Hb_000927_020 Hb_000927_020 Hb_004235_030--Hb_000927_020 Hb_005016_050 Hb_005016_050 Hb_004235_030--Hb_005016_050 Hb_004899_050 Hb_004899_050 Hb_004235_030--Hb_004899_050 Hb_005679_070 Hb_005679_070 Hb_005085_030--Hb_005679_070 Hb_004060_030 Hb_004060_030 Hb_005085_030--Hb_004060_030 Hb_005085_030--Hb_152554_010 Hb_006663_090 Hb_006663_090 Hb_005085_030--Hb_006663_090 Hb_007188_020 Hb_007188_020 Hb_005085_030--Hb_007188_020 Hb_166480_010 Hb_166480_010 Hb_005085_030--Hb_166480_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93951 1.6377 1.27039 37.8995 5.02298 57.1409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.76 18.389 15.7047 9.83481 18.3257

CAGE analysis