Hb_000174_040

Information

Type -
Description -
Location Contig174: 54649-58548
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_040 0.0 - - -
2 Hb_002482_040 0.1620332797 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
3 Hb_025190_010 0.1736599337 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001195_490 0.1832636458 - - hypothetical protein glysoja_018593 [Glycine soja]
5 Hb_076175_010 0.1838892431 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
6 Hb_002078_260 0.1949856966 - - unknown [Populus trichocarpa]
7 Hb_027760_020 0.1990460927 - - hypothetical protein M569_04462, partial [Genlisea aurea]
8 Hb_007894_230 0.1995634967 - - 30S ribosomal protein S14, putative [Ricinus communis]
9 Hb_135940_010 0.2038527758 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
10 Hb_009372_030 0.2061575671 - - 50S ribosomal protein L6, putative [Ricinus communis]
11 Hb_001935_150 0.2071033405 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
12 Hb_029142_070 0.208307768 - - -
13 Hb_011644_010 0.2139954842 - - PREDICTED: probable choline-phosphate cytidylyltransferase [Elaeis guineensis]
14 Hb_002284_050 0.2144584241 - - hypothetical protein POPTR_0002s00740g [Populus trichocarpa]
15 Hb_030982_020 0.2152196837 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
16 Hb_001504_080 0.2211308144 - - golgi snare 11 protein, putative [Ricinus communis]
17 Hb_011512_050 0.2215049134 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
18 Hb_000097_010 0.222621677 - - -
19 Hb_005694_020 0.2226847249 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
20 Hb_041205_010 0.2263996023 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000174_040 Hb_000174_040 Hb_002482_040 Hb_002482_040 Hb_000174_040--Hb_002482_040 Hb_025190_010 Hb_025190_010 Hb_000174_040--Hb_025190_010 Hb_001195_490 Hb_001195_490 Hb_000174_040--Hb_001195_490 Hb_076175_010 Hb_076175_010 Hb_000174_040--Hb_076175_010 Hb_002078_260 Hb_002078_260 Hb_000174_040--Hb_002078_260 Hb_027760_020 Hb_027760_020 Hb_000174_040--Hb_027760_020 Hb_002482_040--Hb_076175_010 Hb_001638_240 Hb_001638_240 Hb_002482_040--Hb_001638_240 Hb_005588_070 Hb_005588_070 Hb_002482_040--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_002482_040--Hb_000672_120 Hb_030982_020 Hb_030982_020 Hb_002482_040--Hb_030982_020 Hb_003688_110 Hb_003688_110 Hb_025190_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_025190_010--Hb_002200_050 Hb_025190_010--Hb_002482_040 Hb_026228_010 Hb_026228_010 Hb_025190_010--Hb_026228_010 Hb_029142_020 Hb_029142_020 Hb_025190_010--Hb_029142_020 Hb_000260_790 Hb_000260_790 Hb_001195_490--Hb_000260_790 Hb_001935_150 Hb_001935_150 Hb_001195_490--Hb_001935_150 Hb_000049_050 Hb_000049_050 Hb_001195_490--Hb_000049_050 Hb_000975_230 Hb_000975_230 Hb_001195_490--Hb_000975_230 Hb_002631_260 Hb_002631_260 Hb_001195_490--Hb_002631_260 Hb_077399_010 Hb_077399_010 Hb_001195_490--Hb_077399_010 Hb_009372_030 Hb_009372_030 Hb_076175_010--Hb_009372_030 Hb_076175_010--Hb_001935_150 Hb_076175_010--Hb_030982_020 Hb_076175_010--Hb_002078_260 Hb_010449_040 Hb_010449_040 Hb_076175_010--Hb_010449_040 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_002078_260--Hb_132180_010 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_000369_120 Hb_000369_120 Hb_027760_020--Hb_000369_120 Hb_008642_030 Hb_008642_030 Hb_027760_020--Hb_008642_030 Hb_005167_030 Hb_005167_030 Hb_027760_020--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_027760_020--Hb_002154_110 Hb_000016_170 Hb_000016_170 Hb_027760_020--Hb_000016_170 Hb_027760_020--Hb_005694_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.11356 0.176059 1.0556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.824796 1.13378 0.773341 0.348238 0.565891

CAGE analysis