Hb_000258_340

Information

Type -
Description -
Location Contig258: 328347-329459
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016055mg
description hypothetical protein
nr
ID XP_012067617.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZVG8
description Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1
trembl
ID A0A067L1U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15585 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_340 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
2 Hb_086077_020 0.2194874795 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
3 Hb_004440_080 0.2460138134 - - PREDICTED: syntaxin-112 [Populus euphratica]
4 Hb_001172_090 0.2506547667 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_019656_010 0.2546722849 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_005372_020 0.2960626487 - - PREDICTED: uncharacterized protein LOC104738384 [Camelina sativa]
7 Hb_010977_010 0.2961867505 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_181240_010 0.2988706651 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_003081_030 0.3144415043 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
10 Hb_000012_460 0.3188123281 - - unknown [Populus trichocarpa]
11 Hb_000772_040 0.3202549937 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
12 Hb_004650_060 0.3215497016 - - putative retrotransposon protein [Phyllostachys edulis]
13 Hb_000154_010 0.3326071592 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_004734_050 0.340685117 - - -
15 Hb_131102_010 0.3413463708 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_006132_030 0.3415570284 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
17 Hb_043708_010 0.3448839704 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
18 Hb_003944_020 0.3451984937 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
19 Hb_002249_100 0.3499153047 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
20 Hb_026239_010 0.350115219 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_000258_340 Hb_000258_340 Hb_086077_020 Hb_086077_020 Hb_000258_340--Hb_086077_020 Hb_004440_080 Hb_004440_080 Hb_000258_340--Hb_004440_080 Hb_001172_090 Hb_001172_090 Hb_000258_340--Hb_001172_090 Hb_019656_010 Hb_019656_010 Hb_000258_340--Hb_019656_010 Hb_005372_020 Hb_005372_020 Hb_000258_340--Hb_005372_020 Hb_010977_010 Hb_010977_010 Hb_000258_340--Hb_010977_010 Hb_086077_020--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_086077_020--Hb_000012_460 Hb_086077_020--Hb_010977_010 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_133820_010 Hb_133820_010 Hb_086077_020--Hb_133820_010 Hb_004440_080--Hb_000012_460 Hb_002888_020 Hb_002888_020 Hb_004440_080--Hb_002888_020 Hb_002602_020 Hb_002602_020 Hb_004440_080--Hb_002602_020 Hb_004440_080--Hb_010977_010 Hb_001172_090--Hb_010977_010 Hb_162633_010 Hb_162633_010 Hb_001172_090--Hb_162633_010 Hb_001172_090--Hb_019656_010 Hb_001172_090--Hb_086077_020 Hb_131102_010 Hb_131102_010 Hb_001172_090--Hb_131102_010 Hb_043708_010 Hb_043708_010 Hb_019656_010--Hb_043708_010 Hb_019656_010--Hb_131102_010 Hb_004650_060 Hb_004650_060 Hb_019656_010--Hb_004650_060 Hb_019656_010--Hb_010977_010 Hb_002205_060 Hb_002205_060 Hb_005372_020--Hb_002205_060 Hb_012490_100 Hb_012490_100 Hb_005372_020--Hb_012490_100 Hb_056012_020 Hb_056012_020 Hb_005372_020--Hb_056012_020 Hb_092650_010 Hb_092650_010 Hb_005372_020--Hb_092650_010 Hb_000656_090 Hb_000656_090 Hb_005372_020--Hb_000656_090 Hb_010977_010--Hb_004650_060 Hb_010977_010--Hb_133820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.139859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0727991 0.0572372 0.102975 0.0232151 0.228439

CAGE analysis