Hb_162633_010

Information

Type -
Description -
Location Contig162633: 272-517
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02600g
description POPTRDRAFT_568438; hypothetical protein
nr
ID XP_002317294.1
description hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HZP8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02600g PE=4 SV=1
Gene Ontology
ID GO:0004672
description cbl-interacting serine threonine-protein kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162633_010 0.0 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
2 Hb_169780_010 0.2125975568 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
3 Hb_034658_010 0.2293400162 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001172_090 0.2402502077 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_002888_010 0.2596304191 - - -
6 Hb_007479_030 0.2898533268 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
7 Hb_010977_010 0.2967125358 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000608_460 0.3130014949 - - -
9 Hb_001344_030 0.3197316815 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_019656_010 0.3214470831 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000837_010 0.3258379985 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
12 Hb_003005_040 0.3275971452 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_033152_040 0.3325529581 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_003523_040 0.3358462858 - - F15O4.13 [Arabidopsis thaliana]
15 Hb_000757_090 0.3369399085 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
16 Hb_153051_010 0.3375940503 - - -
17 Hb_186054_010 0.339197754 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_005344_030 0.3414437139 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
19 Hb_005337_110 0.3422428577 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_122556_010 0.3471231709 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_162633_010 Hb_162633_010 Hb_169780_010 Hb_169780_010 Hb_162633_010--Hb_169780_010 Hb_034658_010 Hb_034658_010 Hb_162633_010--Hb_034658_010 Hb_001172_090 Hb_001172_090 Hb_162633_010--Hb_001172_090 Hb_002888_010 Hb_002888_010 Hb_162633_010--Hb_002888_010 Hb_007479_030 Hb_007479_030 Hb_162633_010--Hb_007479_030 Hb_010977_010 Hb_010977_010 Hb_162633_010--Hb_010977_010 Hb_169780_010--Hb_034658_010 Hb_005337_110 Hb_005337_110 Hb_169780_010--Hb_005337_110 Hb_141425_010 Hb_141425_010 Hb_169780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_169780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_169780_010--Hb_123396_010 Hb_170973_010 Hb_170973_010 Hb_034658_010--Hb_170973_010 Hb_009268_030 Hb_009268_030 Hb_034658_010--Hb_009268_030 Hb_034658_010--Hb_141425_010 Hb_034658_010--Hb_000987_110 Hb_001172_090--Hb_010977_010 Hb_019656_010 Hb_019656_010 Hb_001172_090--Hb_019656_010 Hb_000258_340 Hb_000258_340 Hb_001172_090--Hb_000258_340 Hb_086077_020 Hb_086077_020 Hb_001172_090--Hb_086077_020 Hb_131102_010 Hb_131102_010 Hb_001172_090--Hb_131102_010 Hb_000608_460 Hb_000608_460 Hb_002888_010--Hb_000608_460 Hb_014568_020 Hb_014568_020 Hb_002888_010--Hb_014568_020 Hb_000310_070 Hb_000310_070 Hb_002888_010--Hb_000310_070 Hb_148209_060 Hb_148209_060 Hb_002888_010--Hb_148209_060 Hb_003144_050 Hb_003144_050 Hb_002888_010--Hb_003144_050 Hb_033152_040 Hb_033152_040 Hb_007479_030--Hb_033152_040 Hb_000816_220 Hb_000816_220 Hb_007479_030--Hb_000816_220 Hb_000387_090 Hb_000387_090 Hb_007479_030--Hb_000387_090 Hb_013253_030 Hb_013253_030 Hb_007479_030--Hb_013253_030 Hb_000445_200 Hb_000445_200 Hb_007479_030--Hb_000445_200 Hb_001484_080 Hb_001484_080 Hb_007479_030--Hb_001484_080 Hb_010977_010--Hb_086077_020 Hb_004650_060 Hb_004650_060 Hb_010977_010--Hb_004650_060 Hb_010977_010--Hb_019656_010 Hb_004440_080 Hb_004440_080 Hb_010977_010--Hb_004440_080 Hb_133820_010 Hb_133820_010 Hb_010977_010--Hb_133820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97838 0.523758 1.31774 0 4.22501

CAGE analysis