Hb_000445_200

Information

Type -
Description -
Location Contig445: 214351-217205
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012092674.1
description PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_200 0.0 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
2 Hb_000387_090 0.2276288196 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
3 Hb_013253_030 0.2349048966 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
4 Hb_000184_030 0.2452795853 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
5 Hb_007479_030 0.2498196075 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
6 Hb_000367_140 0.2539887862 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
7 Hb_001623_600 0.2568669289 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
8 Hb_000043_100 0.2651326344 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
9 Hb_158235_010 0.2664627347 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
10 Hb_000062_520 0.275929143 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004218_260 0.2779498457 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
12 Hb_003020_290 0.281163728 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
13 Hb_010589_030 0.2817074964 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
14 Hb_000816_220 0.2822225927 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
15 Hb_186054_010 0.28225294 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_006111_040 0.2834665512 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
17 Hb_001484_080 0.2857825437 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
18 Hb_000699_080 0.2928156181 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
19 Hb_172665_010 0.2945922632 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000935_020 0.2986643788 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]

Gene co-expression network

sample Hb_000445_200 Hb_000445_200 Hb_000387_090 Hb_000387_090 Hb_000445_200--Hb_000387_090 Hb_013253_030 Hb_013253_030 Hb_000445_200--Hb_013253_030 Hb_000184_030 Hb_000184_030 Hb_000445_200--Hb_000184_030 Hb_007479_030 Hb_007479_030 Hb_000445_200--Hb_007479_030 Hb_000367_140 Hb_000367_140 Hb_000445_200--Hb_000367_140 Hb_001623_600 Hb_001623_600 Hb_000445_200--Hb_001623_600 Hb_000387_090--Hb_007479_030 Hb_001344_030 Hb_001344_030 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040 Hb_000043_100 Hb_000043_100 Hb_013253_030--Hb_000043_100 Hb_158235_010 Hb_158235_010 Hb_013253_030--Hb_158235_010 Hb_009572_010 Hb_009572_010 Hb_013253_030--Hb_009572_010 Hb_000816_220 Hb_000816_220 Hb_013253_030--Hb_000816_220 Hb_000329_580 Hb_000329_580 Hb_013253_030--Hb_000329_580 Hb_009615_180 Hb_009615_180 Hb_000184_030--Hb_009615_180 Hb_001294_030 Hb_001294_030 Hb_000184_030--Hb_001294_030 Hb_000062_520 Hb_000062_520 Hb_000184_030--Hb_000062_520 Hb_000189_520 Hb_000189_520 Hb_000184_030--Hb_000189_520 Hb_001484_080 Hb_001484_080 Hb_000184_030--Hb_001484_080 Hb_114861_010 Hb_114861_010 Hb_000184_030--Hb_114861_010 Hb_007479_030--Hb_033152_040 Hb_007479_030--Hb_000816_220 Hb_007479_030--Hb_013253_030 Hb_007479_030--Hb_001484_080 Hb_000699_080 Hb_000699_080 Hb_000367_140--Hb_000699_080 Hb_000360_010 Hb_000360_010 Hb_000367_140--Hb_000360_010 Hb_000359_070 Hb_000359_070 Hb_000367_140--Hb_000359_070 Hb_003336_020 Hb_003336_020 Hb_000367_140--Hb_003336_020 Hb_003905_030 Hb_003905_030 Hb_000367_140--Hb_003905_030 Hb_156850_020 Hb_156850_020 Hb_000367_140--Hb_156850_020 Hb_057207_010 Hb_057207_010 Hb_001623_600--Hb_057207_010 Hb_001623_600--Hb_000387_090 Hb_104721_010 Hb_104721_010 Hb_001623_600--Hb_104721_010 Hb_003487_010 Hb_003487_010 Hb_001623_600--Hb_003487_010 Hb_002874_040 Hb_002874_040 Hb_001623_600--Hb_002874_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200793 0 0.0150147 0.016958 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0459284 0.0361251 0 0.0145011 0.222914

CAGE analysis