Hb_001623_600

Information

Type -
Description -
Location Contig1623: 463315-466916
Sequence    

Annotation

kegg
ID mus:103974748
description uncharacterized protein LOC103974748
nr
ID XP_010468679.1
description PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A087G2M9
description Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs45400U000100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_600 0.0 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
2 Hb_000445_200 0.2568669289 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
3 Hb_057207_010 0.284247163 - - hypothetical protein F383_17010 [Gossypium arboreum]
4 Hb_000387_090 0.2960514507 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
5 Hb_104721_010 0.3066202284 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
6 Hb_003487_010 0.3103630056 - - -
7 Hb_002874_040 0.3112119547 - - -
8 Hb_049717_010 0.3127380305 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
9 Hb_186054_010 0.3128575347 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_100684_010 0.32112863 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_004218_260 0.324198047 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
12 Hb_001878_030 0.3300326379 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
13 Hb_001123_020 0.3300861522 - - PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2 [Jatropha curcas]
14 Hb_000402_100 0.330276971 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
15 Hb_116020_010 0.3303731127 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
16 Hb_006452_230 0.3327360971 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
17 Hb_033152_040 0.335486379 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
18 Hb_035935_010 0.3395289601 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
19 Hb_108768_010 0.3404378218 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_000576_100 0.3407534716 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_600 Hb_001623_600 Hb_000445_200 Hb_000445_200 Hb_001623_600--Hb_000445_200 Hb_057207_010 Hb_057207_010 Hb_001623_600--Hb_057207_010 Hb_000387_090 Hb_000387_090 Hb_001623_600--Hb_000387_090 Hb_104721_010 Hb_104721_010 Hb_001623_600--Hb_104721_010 Hb_003487_010 Hb_003487_010 Hb_001623_600--Hb_003487_010 Hb_002874_040 Hb_002874_040 Hb_001623_600--Hb_002874_040 Hb_000445_200--Hb_000387_090 Hb_013253_030 Hb_013253_030 Hb_000445_200--Hb_013253_030 Hb_000184_030 Hb_000184_030 Hb_000445_200--Hb_000184_030 Hb_007479_030 Hb_007479_030 Hb_000445_200--Hb_007479_030 Hb_000367_140 Hb_000367_140 Hb_000445_200--Hb_000367_140 Hb_126044_010 Hb_126044_010 Hb_057207_010--Hb_126044_010 Hb_001335_050 Hb_001335_050 Hb_057207_010--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_057207_010--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_057207_010--Hb_005654_010 Hb_007064_030 Hb_007064_030 Hb_057207_010--Hb_007064_030 Hb_000387_090--Hb_007479_030 Hb_001344_030 Hb_001344_030 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040 Hb_186054_010 Hb_186054_010 Hb_104721_010--Hb_186054_010 Hb_104721_010--Hb_001344_030 Hb_012717_030 Hb_012717_030 Hb_104721_010--Hb_012717_030 Hb_104721_010--Hb_005654_010 Hb_000757_090 Hb_000757_090 Hb_104721_010--Hb_000757_090 Hb_005542_170 Hb_005542_170 Hb_104721_010--Hb_005542_170 Hb_003155_060 Hb_003155_060 Hb_003487_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003487_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_003487_010--Hb_108768_010 Hb_155403_010 Hb_155403_010 Hb_003487_010--Hb_155403_010 Hb_007749_030 Hb_007749_030 Hb_003487_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003487_010--Hb_002536_020 Hb_000052_020 Hb_000052_020 Hb_002874_040--Hb_000052_020 Hb_002918_050 Hb_002918_050 Hb_002874_040--Hb_002918_050 Hb_002888_020 Hb_002888_020 Hb_002874_040--Hb_002888_020 Hb_003734_110 Hb_003734_110 Hb_002874_040--Hb_003734_110 Hb_007426_160 Hb_007426_160 Hb_002874_040--Hb_007426_160 Hb_000012_160 Hb_000012_160 Hb_002874_040--Hb_000012_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00990249 0 0.00592463 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0362983 0.0142812 0 0.0170165 0.0606783

CAGE analysis