Hb_003487_010

Information

Type -
Description -
Location Contig3487: 27434-28506
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003487_010 0.0 - - -
2 Hb_003155_060 0.1693873613 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
3 Hb_000576_100 0.1694367227 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_108768_010 0.1701255545 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_155403_010 0.1752578625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_007749_030 0.1909778646 - - -
7 Hb_002536_020 0.2016407802 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
8 Hb_001195_700 0.2266250947 - - -
9 Hb_027751_010 0.2536192138 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_017687_010 0.2582384024 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
11 Hb_076836_010 0.2644457767 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
12 Hb_001844_010 0.2644560388 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_002478_050 0.2645010335 - - K(+)/H(+) antiporter, putative [Ricinus communis]
14 Hb_000485_060 0.2645314973 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
15 Hb_005781_010 0.2645951653 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
16 Hb_006094_010 0.264628293 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
17 Hb_177166_010 0.26469915 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_003828_010 0.2647451186 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
19 Hb_064445_030 0.264755466 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_024446_010 0.2648017643 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_003487_010 Hb_003487_010 Hb_003155_060 Hb_003155_060 Hb_003487_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003487_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_003487_010--Hb_108768_010 Hb_155403_010 Hb_155403_010 Hb_003487_010--Hb_155403_010 Hb_007749_030 Hb_007749_030 Hb_003487_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003487_010--Hb_002536_020 Hb_003155_060--Hb_000576_100 Hb_003155_060--Hb_108768_010 Hb_003155_060--Hb_007749_030 Hb_003155_060--Hb_002536_020 Hb_017687_010 Hb_017687_010 Hb_003155_060--Hb_017687_010 Hb_000576_100--Hb_108768_010 Hb_000576_100--Hb_007749_030 Hb_000576_100--Hb_002536_020 Hb_000576_100--Hb_017687_010 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_108768_010--Hb_017687_010 Hb_001386_030 Hb_001386_030 Hb_155403_010--Hb_001386_030 Hb_001123_020 Hb_001123_020 Hb_155403_010--Hb_001123_020 Hb_001195_700 Hb_001195_700 Hb_155403_010--Hb_001195_700 Hb_027751_010 Hb_027751_010 Hb_155403_010--Hb_027751_010 Hb_155403_010--Hb_003155_060 Hb_007749_030--Hb_002536_020 Hb_003607_100 Hb_003607_100 Hb_007749_030--Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_002536_020--Hb_115572_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.368507 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.14674 0 0 0.535339 3.74855

CAGE analysis