Hb_001195_700

Information

Type -
Description -
Location Contig1195: 502831-503910
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05872: 500165-501938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_700 0.0 - - -
2 Hb_001136_050 0.1937120074 - - -
3 Hb_003607_100 0.1975454555 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
4 Hb_008375_020 0.2113371725 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
5 Hb_076836_010 0.2261388812 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
6 Hb_001844_010 0.2263291721 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_003487_010 0.2266250947 - - -
8 Hb_002478_050 0.2270706176 - - K(+)/H(+) antiporter, putative [Ricinus communis]
9 Hb_000485_060 0.2275114797 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
10 Hb_003376_240 0.2282080682 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005781_010 0.2283295427 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
12 Hb_006094_010 0.2287147767 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_177166_010 0.229472131 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_003828_010 0.2299253914 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
15 Hb_064445_030 0.2300239911 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_024446_010 0.230451624 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_028910_010 0.2348181129 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_003504_050 0.2367200537 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
19 Hb_004772_010 0.2412431418 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
20 Hb_011206_030 0.2447263553 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001195_700 Hb_001195_700 Hb_001136_050 Hb_001136_050 Hb_001195_700--Hb_001136_050 Hb_003607_100 Hb_003607_100 Hb_001195_700--Hb_003607_100 Hb_008375_020 Hb_008375_020 Hb_001195_700--Hb_008375_020 Hb_076836_010 Hb_076836_010 Hb_001195_700--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_001195_700--Hb_001844_010 Hb_003487_010 Hb_003487_010 Hb_001195_700--Hb_003487_010 Hb_174230_010 Hb_174230_010 Hb_001136_050--Hb_174230_010 Hb_009572_010 Hb_009572_010 Hb_001136_050--Hb_009572_010 Hb_003144_010 Hb_003144_010 Hb_001136_050--Hb_003144_010 Hb_084849_030 Hb_084849_030 Hb_001136_050--Hb_084849_030 Hb_049187_010 Hb_049187_010 Hb_001136_050--Hb_049187_010 Hb_003607_100--Hb_008375_020 Hb_028910_010 Hb_028910_010 Hb_003607_100--Hb_028910_010 Hb_003607_100--Hb_076836_010 Hb_003607_100--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_003607_100--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_003607_100--Hb_000485_060 Hb_008375_020--Hb_028910_010 Hb_004432_030 Hb_004432_030 Hb_008375_020--Hb_004432_030 Hb_008375_020--Hb_076836_010 Hb_008375_020--Hb_001844_010 Hb_008375_020--Hb_002478_050 Hb_076836_010--Hb_001844_010 Hb_076836_010--Hb_002478_050 Hb_076836_010--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_076836_010--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_076836_010--Hb_006094_010 Hb_177166_010 Hb_177166_010 Hb_076836_010--Hb_177166_010 Hb_001844_010--Hb_002478_050 Hb_001844_010--Hb_000485_060 Hb_001844_010--Hb_005781_010 Hb_001844_010--Hb_006094_010 Hb_001844_010--Hb_177166_010 Hb_003155_060 Hb_003155_060 Hb_003487_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_003487_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_003487_010--Hb_108768_010 Hb_155403_010 Hb_155403_010 Hb_003487_010--Hb_155403_010 Hb_007749_030 Hb_007749_030 Hb_003487_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_003487_010--Hb_002536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0363756 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.11087 0 0 0 0.333687

CAGE analysis