Hb_008375_020

Information

Type -
Description -
Location Contig8375: 44758-45930
Sequence    

Annotation

kegg
ID bvg:104894372
description uncharacterized LOC104894372
nr
ID XP_010678896.1
description PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60013: 8620-49762
cDNA
(Sanger)
(ID:Location)		 050_I23.ab1: 8620-49762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008375_020 0.0 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
2 Hb_028910_010 0.052822977 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_003607_100 0.065687426 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
4 Hb_004432_030 0.1079452124 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_076836_010 0.1895373443 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
6 Hb_001844_010 0.1899293819 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_002478_050 0.1914470344 - - K(+)/H(+) antiporter, putative [Ricinus communis]
8 Hb_000485_060 0.1923421599 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
9 Hb_005781_010 0.1939892954 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
10 Hb_006094_010 0.1947588865 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
11 Hb_177166_010 0.1962609299 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
12 Hb_003828_010 0.1971531167 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
13 Hb_064445_030 0.1973465427 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
14 Hb_024446_010 0.1981827757 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
15 Hb_002536_020 0.1996086458 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
16 Hb_003504_050 0.2099922176 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
17 Hb_001195_700 0.2113371725 - - -
18 Hb_115572_040 0.2123403667 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
19 Hb_007749_030 0.2164537373 - - -
20 Hb_004772_010 0.2180696442 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]

Gene co-expression network

sample Hb_008375_020 Hb_008375_020 Hb_028910_010 Hb_028910_010 Hb_008375_020--Hb_028910_010 Hb_003607_100 Hb_003607_100 Hb_008375_020--Hb_003607_100 Hb_004432_030 Hb_004432_030 Hb_008375_020--Hb_004432_030 Hb_076836_010 Hb_076836_010 Hb_008375_020--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_008375_020--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_008375_020--Hb_002478_050 Hb_028910_010--Hb_004432_030 Hb_028910_010--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_028910_010--Hb_115572_040 Hb_003376_240 Hb_003376_240 Hb_028910_010--Hb_003376_240 Hb_002536_020 Hb_002536_020 Hb_028910_010--Hb_002536_020 Hb_003607_100--Hb_076836_010 Hb_003607_100--Hb_001844_010 Hb_003607_100--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_003607_100--Hb_000485_060 Hb_004432_030--Hb_003607_100 Hb_004242_130 Hb_004242_130 Hb_004432_030--Hb_004242_130 Hb_004432_030--Hb_115572_040 Hb_000002_470 Hb_000002_470 Hb_004432_030--Hb_000002_470 Hb_076836_010--Hb_001844_010 Hb_076836_010--Hb_002478_050 Hb_076836_010--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_076836_010--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_076836_010--Hb_006094_010 Hb_177166_010 Hb_177166_010 Hb_076836_010--Hb_177166_010 Hb_001844_010--Hb_002478_050 Hb_001844_010--Hb_000485_060 Hb_001844_010--Hb_005781_010 Hb_001844_010--Hb_006094_010 Hb_001844_010--Hb_177166_010 Hb_002478_050--Hb_000485_060 Hb_002478_050--Hb_005781_010 Hb_002478_050--Hb_006094_010 Hb_002478_050--Hb_177166_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0712689 0 0 0 0.336034

CAGE analysis