Hb_004242_130

Information

Type -
Description -
Location Contig4242: 112500-129426
Sequence    

Annotation

kegg
ID cit:102614827
description (-)-germacrene D synthase-like
nr
ID AAR99061.1
description (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides]
swissprot
ID Q6Q3H3
description (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
trembl
ID Q64K29
description (-)-germacrene D synthase OS=Populus trichocarpa x Populus deltoides GN=Tps1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41965: 126159-128374 , PASA_asmbl_41966: 128375-129268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_130 0.0 - - (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides]
2 Hb_072695_010 0.12266457 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
3 Hb_001790_110 0.1304617545 - - unknown [Populus trichocarpa]
4 Hb_000326_100 0.131577061 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
5 Hb_000002_470 0.1327647821 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
6 Hb_000003_630 0.1327647821 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_000004_050 0.1327647821 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
8 Hb_000007_350 0.1327647821 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000010_490 0.1327647821 - - hypothetical protein CICLE_v10027565mg, partial [Citrus clementina]
10 Hb_000017_170 0.1327647821 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
11 Hb_000017_240 0.1327647821 - - -
12 Hb_000022_030 0.1327647821 - - Uncharacterized protein TCM_003129 [Theobroma cacao]
13 Hb_000022_040 0.1327647821 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000023_070 0.1327647821 - - hypothetical protein, partial [Cecembia lonarensis]
15 Hb_000024_060 0.1327647821 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
16 Hb_000027_250 0.1327647821 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
17 Hb_000031_360 0.1327647821 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000037_130 0.1327647821 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
19 Hb_000042_320 0.1327647821 - - unnamed protein product [Coffea canephora]
20 Hb_000042_400 0.1327647821 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004242_130 Hb_004242_130 Hb_072695_010 Hb_072695_010 Hb_004242_130--Hb_072695_010 Hb_001790_110 Hb_001790_110 Hb_004242_130--Hb_001790_110 Hb_000326_100 Hb_000326_100 Hb_004242_130--Hb_000326_100 Hb_000002_470 Hb_000002_470 Hb_004242_130--Hb_000002_470 Hb_000003_630 Hb_000003_630 Hb_004242_130--Hb_000003_630 Hb_000004_050 Hb_000004_050 Hb_004242_130--Hb_000004_050 Hb_125153_010 Hb_125153_010 Hb_072695_010--Hb_125153_010 Hb_072695_010--Hb_001790_110 Hb_000959_380 Hb_000959_380 Hb_072695_010--Hb_000959_380 Hb_151061_040 Hb_151061_040 Hb_072695_010--Hb_151061_040 Hb_000388_020 Hb_000388_020 Hb_072695_010--Hb_000388_020 Hb_054839_010 Hb_054839_010 Hb_072695_010--Hb_054839_010 Hb_005087_020 Hb_005087_020 Hb_001790_110--Hb_005087_020 Hb_000907_010 Hb_000907_010 Hb_001790_110--Hb_000907_010 Hb_001790_110--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_001790_110--Hb_131816_010 Hb_104509_010 Hb_104509_010 Hb_001790_110--Hb_104509_010 Hb_003144_020 Hb_003144_020 Hb_000326_100--Hb_003144_020 Hb_000326_100--Hb_000959_380 Hb_000326_100--Hb_131816_010 Hb_000326_100--Hb_104509_010 Hb_005224_020 Hb_005224_020 Hb_000326_100--Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_000326_100--Hb_005914_030 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000007_350 Hb_000007_350 Hb_000002_470--Hb_000007_350 Hb_000010_490 Hb_000010_490 Hb_000002_470--Hb_000010_490 Hb_000017_170 Hb_000017_170 Hb_000002_470--Hb_000017_170 Hb_000017_240 Hb_000017_240 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240 Hb_000002_470--Hb_000003_630 Hb_000002_470--Hb_000004_050 Hb_000002_470--Hb_000007_350 Hb_000002_470--Hb_000010_490 Hb_000002_470--Hb_000017_170 Hb_000002_470--Hb_000017_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0986954 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149109 0.169483 0 0 11.5709

CAGE analysis