Hb_076836_010

Information

Type -
Description -
Location Contig76836: 1987-6635
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_010523613.1
description PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID Q6L3M7
description Gag-pol protein, putative OS=Solanum demissum GN=SDM1_27t00008 PE=4 SV=2
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076836_010 0.0 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
2 Hb_001844_010 0.0003988576 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
3 Hb_002478_050 0.00194312 - - K(+)/H(+) antiporter, putative [Ricinus communis]
4 Hb_000485_060 0.0028540952 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
5 Hb_005781_010 0.0045306949 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
6 Hb_006094_010 0.0053141849 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_177166_010 0.0068435972 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_003828_010 0.0077521915 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
9 Hb_064445_030 0.0079491895 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_024446_010 0.0088009255 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_003504_050 0.0208396677 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
12 Hb_004772_010 0.0290848525 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
13 Hb_011206_030 0.0352265731 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
14 Hb_048953_010 0.0352265731 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
15 Hb_006267_050 0.0406734405 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_001595_060 0.0411910315 - - hypothetical protein L484_001429 [Morus notabilis]
17 Hb_041813_020 0.0439503476 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
18 Hb_002325_080 0.0593731703 - - -
19 Hb_003607_100 0.1247178272 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
20 Hb_008879_010 0.159241505 - - Beta-ureidopropionase, putative [Ricinus communis]

Gene co-expression network

sample Hb_076836_010 Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_076836_010--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_076836_010--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_076836_010--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_076836_010--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_076836_010--Hb_006094_010 Hb_177166_010 Hb_177166_010 Hb_076836_010--Hb_177166_010 Hb_001844_010--Hb_002478_050 Hb_001844_010--Hb_000485_060 Hb_001844_010--Hb_005781_010 Hb_001844_010--Hb_006094_010 Hb_001844_010--Hb_177166_010 Hb_002478_050--Hb_000485_060 Hb_002478_050--Hb_005781_010 Hb_002478_050--Hb_006094_010 Hb_002478_050--Hb_177166_010 Hb_000485_060--Hb_005781_010 Hb_000485_060--Hb_006094_010 Hb_000485_060--Hb_177166_010 Hb_005781_010--Hb_006094_010 Hb_005781_010--Hb_177166_010 Hb_003828_010 Hb_003828_010 Hb_005781_010--Hb_003828_010 Hb_064445_030 Hb_064445_030 Hb_005781_010--Hb_064445_030 Hb_006094_010--Hb_177166_010 Hb_006094_010--Hb_003828_010 Hb_006094_010--Hb_064445_030 Hb_177166_010--Hb_003828_010 Hb_177166_010--Hb_064445_030 Hb_024446_010 Hb_024446_010 Hb_177166_010--Hb_024446_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0108304 0 0 0 0.0182648

CAGE analysis