Hb_002536_020

Information

Type -
Description -
Location Contig2536: 35963-37062
Sequence    

Annotation

kegg
ID tcc:TCM_023117
description Gag protease polyprotein, putative
nr
ID XP_012487895.1
description PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVL9
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_05300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002536_020 0.0 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
2 Hb_007749_030 0.0227802578 - - -
3 Hb_003155_060 0.1330179352 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_000576_100 0.1333616595 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_108768_010 0.1377277886 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_003607_100 0.1890767282 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
7 Hb_115572_040 0.1936746866 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
8 Hb_008375_020 0.1996086458 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
9 Hb_003487_010 0.2016407802 - - -
10 Hb_100684_010 0.2108274177 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_028910_010 0.2216302943 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_076836_010 0.2255088367 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
13 Hb_001844_010 0.2257207462 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_002478_050 0.2265455307 - - K(+)/H(+) antiporter, putative [Ricinus communis]
15 Hb_000485_060 0.227035285 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
16 Hb_005781_010 0.2279428055 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
17 Hb_006094_010 0.2283696094 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_177166_010 0.2292076794 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_003828_010 0.229708621 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
20 Hb_064445_030 0.2298175322 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_002536_020 Hb_002536_020 Hb_007749_030 Hb_007749_030 Hb_002536_020--Hb_007749_030 Hb_003155_060 Hb_003155_060 Hb_002536_020--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_002536_020--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_002536_020--Hb_108768_010 Hb_003607_100 Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_002536_020--Hb_115572_040 Hb_007749_030--Hb_003155_060 Hb_007749_030--Hb_000576_100 Hb_007749_030--Hb_108768_010 Hb_003487_010 Hb_003487_010 Hb_007749_030--Hb_003487_010 Hb_007749_030--Hb_003607_100 Hb_003155_060--Hb_000576_100 Hb_003155_060--Hb_108768_010 Hb_003155_060--Hb_003487_010 Hb_017687_010 Hb_017687_010 Hb_003155_060--Hb_017687_010 Hb_000576_100--Hb_108768_010 Hb_000576_100--Hb_003487_010 Hb_000576_100--Hb_017687_010 Hb_108768_010--Hb_017687_010 Hb_108768_010--Hb_003487_010 Hb_008375_020 Hb_008375_020 Hb_003607_100--Hb_008375_020 Hb_028910_010 Hb_028910_010 Hb_003607_100--Hb_028910_010 Hb_076836_010 Hb_076836_010 Hb_003607_100--Hb_076836_010 Hb_001844_010 Hb_001844_010 Hb_003607_100--Hb_001844_010 Hb_002478_050 Hb_002478_050 Hb_003607_100--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_003607_100--Hb_000485_060 Hb_003376_240 Hb_003376_240 Hb_115572_040--Hb_003376_240 Hb_000504_210 Hb_000504_210 Hb_115572_040--Hb_000504_210 Hb_115572_040--Hb_028910_010 Hb_115572_040--Hb_007749_030 Hb_115572_040--Hb_008375_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0498077 0 0 0.0157484 0.16044

CAGE analysis