Hb_108768_010

Information

Type -
Description -
Location Contig108768: 11545-12861
Sequence    

Annotation

kegg
ID vvi:104878882
description uncharacterized LOC104878882
nr
ID XP_009764284.1
description PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108768_010 0.0 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
2 Hb_000576_100 0.004460395 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_003155_060 0.0048114459 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_007749_030 0.1155137855 - - -
5 Hb_002536_020 0.1377277886 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
6 Hb_017687_010 0.1679497587 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
7 Hb_003487_010 0.1701255545 - - -
8 Hb_177166_010 0.2357377227 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_003828_010 0.2357401374 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
10 Hb_064445_030 0.2357410969 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
11 Hb_006094_010 0.2357411208 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
12 Hb_005781_010 0.2357464884 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
13 Hb_024446_010 0.2357470327 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_000485_060 0.2357662286 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
15 Hb_002478_050 0.235781671 - - K(+)/H(+) antiporter, putative [Ricinus communis]
16 Hb_001844_010 0.235815433 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_076836_010 0.2358257032 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
18 Hb_003504_050 0.2361411525 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
19 Hb_004772_010 0.2367441848 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
20 Hb_011206_030 0.2373680353 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_108768_010 Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_108768_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_108768_010--Hb_003155_060 Hb_007749_030 Hb_007749_030 Hb_108768_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_108768_010--Hb_002536_020 Hb_017687_010 Hb_017687_010 Hb_108768_010--Hb_017687_010 Hb_003487_010 Hb_003487_010 Hb_108768_010--Hb_003487_010 Hb_000576_100--Hb_003155_060 Hb_000576_100--Hb_007749_030 Hb_000576_100--Hb_002536_020 Hb_000576_100--Hb_003487_010 Hb_000576_100--Hb_017687_010 Hb_003155_060--Hb_007749_030 Hb_003155_060--Hb_002536_020 Hb_003155_060--Hb_003487_010 Hb_003155_060--Hb_017687_010 Hb_007749_030--Hb_002536_020 Hb_007749_030--Hb_003487_010 Hb_003607_100 Hb_003607_100 Hb_007749_030--Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_002536_020--Hb_115572_040 Hb_023161_030 Hb_023161_030 Hb_017687_010--Hb_023161_030 Hb_017687_010--Hb_007749_030 Hb_017687_010--Hb_002536_020 Hb_155403_010 Hb_155403_010 Hb_003487_010--Hb_155403_010 Hb_003487_010--Hb_002536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0379589 0 0 0.0119497 0.0619837

CAGE analysis