Hb_017687_010

Information

Type -
Description -
Location Contig17687: 6533-15969
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024392mg
description hypothetical protein
nr
ID ABG65986.1
description retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q109X8
description Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g12808 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017687_010 0.0 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
2 Hb_108768_010 0.1679497587 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_000576_100 0.1701417696 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_003155_060 0.1703168492 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
5 Hb_023161_030 0.2260945507 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_007749_030 0.2297104796 - - -
7 Hb_002536_020 0.2485624627 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
8 Hb_003487_010 0.2582384024 - - -
9 Hb_100684_010 0.2737303015 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_001878_030 0.2795277784 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
11 Hb_001157_170 0.2920580974 - - PREDICTED: uncharacterized protein LOC104597617 [Nelumbo nucifera]
12 Hb_093543_010 0.3046194478 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_150200_010 0.3069032202 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
14 Hb_004714_020 0.3144364256 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_000038_050 0.3158850843 - - -
16 Hb_189003_030 0.3436574691 - - -
17 Hb_155403_010 0.3523028615 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_001623_600 0.3532804844 - - PREDICTED: uncharacterized protein LOC104748784 [Camelina sativa]
19 Hb_012707_020 0.354037964 - - -
20 Hb_027751_010 0.3690737002 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_017687_010 Hb_017687_010 Hb_108768_010 Hb_108768_010 Hb_017687_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_017687_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_017687_010--Hb_003155_060 Hb_023161_030 Hb_023161_030 Hb_017687_010--Hb_023161_030 Hb_007749_030 Hb_007749_030 Hb_017687_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_017687_010--Hb_002536_020 Hb_108768_010--Hb_000576_100 Hb_108768_010--Hb_003155_060 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_003487_010 Hb_003487_010 Hb_108768_010--Hb_003487_010 Hb_000576_100--Hb_003155_060 Hb_000576_100--Hb_007749_030 Hb_000576_100--Hb_002536_020 Hb_000576_100--Hb_003487_010 Hb_003155_060--Hb_007749_030 Hb_003155_060--Hb_002536_020 Hb_003155_060--Hb_003487_010 Hb_150200_010 Hb_150200_010 Hb_023161_030--Hb_150200_010 Hb_004714_020 Hb_004714_020 Hb_023161_030--Hb_004714_020 Hb_000038_050 Hb_000038_050 Hb_023161_030--Hb_000038_050 Hb_189003_030 Hb_189003_030 Hb_023161_030--Hb_189003_030 Hb_012305_080 Hb_012305_080 Hb_023161_030--Hb_012305_080 Hb_007749_030--Hb_002536_020 Hb_007749_030--Hb_003487_010 Hb_003607_100 Hb_003607_100 Hb_007749_030--Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_002536_020--Hb_115572_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00712976 0 0 0.00665801 0.0120779

CAGE analysis