Hb_189003_030

Information

Type -
Description -
Location Contig189003: 6365-8393
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189003_030 0.0 - - -
2 Hb_023161_030 0.2259852317 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_004714_020 0.265325141 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_150200_010 0.2686828605 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
5 Hb_000038_050 0.3151690878 - - -
6 Hb_012305_080 0.3208157924 - - -
7 Hb_017687_010 0.3436574691 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
8 Hb_000613_260 0.3464427888 - - hypothetical protein VITISV_043487 [Vitis vinifera]
9 Hb_003487_010 0.354987131 - - -
10 Hb_155403_010 0.3628487082 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_027751_010 0.3762024414 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_108768_010 0.3810496563 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_000576_100 0.3831997119 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_003155_060 0.3833700421 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
15 Hb_000230_030 0.390733187 - - hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
16 Hb_002260_260 0.3933347668 - - hypothetical protein VITISV_037667 [Vitis vinifera]
17 Hb_000261_300 0.3970399002 - - -
18 Hb_001054_010 0.4051918898 - - hypothetical protein VITISV_011091 [Vitis vinifera]
19 Hb_002400_150 0.4053534899 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
20 Hb_000157_110 0.4076938861 - - hypothetical protein Csa_6G439410 [Cucumis sativus]

Gene co-expression network

sample Hb_189003_030 Hb_189003_030 Hb_023161_030 Hb_023161_030 Hb_189003_030--Hb_023161_030 Hb_004714_020 Hb_004714_020 Hb_189003_030--Hb_004714_020 Hb_150200_010 Hb_150200_010 Hb_189003_030--Hb_150200_010 Hb_000038_050 Hb_000038_050 Hb_189003_030--Hb_000038_050 Hb_012305_080 Hb_012305_080 Hb_189003_030--Hb_012305_080 Hb_017687_010 Hb_017687_010 Hb_189003_030--Hb_017687_010 Hb_023161_030--Hb_150200_010 Hb_023161_030--Hb_004714_020 Hb_023161_030--Hb_000038_050 Hb_023161_030--Hb_017687_010 Hb_023161_030--Hb_012305_080 Hb_004714_020--Hb_150200_010 Hb_114874_010 Hb_114874_010 Hb_004714_020--Hb_114874_010 Hb_004714_020--Hb_012305_080 Hb_108768_010 Hb_108768_010 Hb_004714_020--Hb_108768_010 Hb_150200_010--Hb_114874_010 Hb_150200_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_150200_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_150200_010--Hb_003155_060 Hb_002260_260 Hb_002260_260 Hb_000038_050--Hb_002260_260 Hb_001496_140 Hb_001496_140 Hb_000038_050--Hb_001496_140 Hb_000038_050--Hb_017687_010 Hb_028751_020 Hb_028751_020 Hb_000038_050--Hb_028751_020 Hb_012305_080--Hb_150200_010 Hb_012305_080--Hb_001496_140 Hb_002123_030 Hb_002123_030 Hb_012305_080--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_012305_080--Hb_012253_020 Hb_017687_010--Hb_108768_010 Hb_017687_010--Hb_000576_100 Hb_017687_010--Hb_003155_060 Hb_007749_030 Hb_007749_030 Hb_017687_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_017687_010--Hb_002536_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0261189 0 0 0.0577992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150443 0 0 0.0960372 0.1177

CAGE analysis