Hb_150200_010

Information

Type -
Description -
Location Contig150200: 23-1776
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012070176.1
description PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150200_010 0.0 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
2 Hb_004714_020 0.013006971 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_114874_010 0.1859744563 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
4 Hb_023161_030 0.216018737 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_108768_010 0.2604782834 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_000576_100 0.2604839356 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_003155_060 0.2604873987 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
8 Hb_189003_030 0.2686828605 - - -
9 Hb_012305_080 0.2710279785 - - -
10 Hb_007749_030 0.2826592921 - - -
11 Hb_002536_020 0.2916714742 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
12 Hb_003487_010 0.3065257138 - - -
13 Hb_017687_010 0.3069032202 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
14 Hb_004116_010 0.3155518121 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_001172_090 0.3218585457 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_000038_050 0.3405788713 - - -
17 Hb_006094_010 0.3475486272 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_005781_010 0.3475486885 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
19 Hb_177166_010 0.3475529625 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
20 Hb_000485_060 0.3475540142 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]

Gene co-expression network

sample Hb_150200_010 Hb_150200_010 Hb_004714_020 Hb_004714_020 Hb_150200_010--Hb_004714_020 Hb_114874_010 Hb_114874_010 Hb_150200_010--Hb_114874_010 Hb_023161_030 Hb_023161_030 Hb_150200_010--Hb_023161_030 Hb_108768_010 Hb_108768_010 Hb_150200_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_150200_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_150200_010--Hb_003155_060 Hb_004714_020--Hb_114874_010 Hb_004714_020--Hb_023161_030 Hb_189003_030 Hb_189003_030 Hb_004714_020--Hb_189003_030 Hb_012305_080 Hb_012305_080 Hb_004714_020--Hb_012305_080 Hb_004714_020--Hb_108768_010 Hb_002536_020 Hb_002536_020 Hb_114874_010--Hb_002536_020 Hb_004116_010 Hb_004116_010 Hb_114874_010--Hb_004116_010 Hb_007749_030 Hb_007749_030 Hb_114874_010--Hb_007749_030 Hb_115572_040 Hb_115572_040 Hb_114874_010--Hb_115572_040 Hb_000038_050 Hb_000038_050 Hb_023161_030--Hb_000038_050 Hb_023161_030--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_023161_030--Hb_017687_010 Hb_023161_030--Hb_012305_080 Hb_108768_010--Hb_000576_100 Hb_108768_010--Hb_003155_060 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_108768_010--Hb_017687_010 Hb_003487_010 Hb_003487_010 Hb_108768_010--Hb_003487_010 Hb_000576_100--Hb_003155_060 Hb_000576_100--Hb_007749_030 Hb_000576_100--Hb_002536_020 Hb_000576_100--Hb_003487_010 Hb_000576_100--Hb_017687_010 Hb_003155_060--Hb_007749_030 Hb_003155_060--Hb_002536_020 Hb_003155_060--Hb_003487_010 Hb_003155_060--Hb_017687_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0136277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0310148 0 0 0.00973881 0.0510594

CAGE analysis