Hb_004714_020

Information

Type -
Description -
Location Contig4714: 66966-68405
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004714_020 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_150200_010 0.013006971 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
3 Hb_114874_010 0.191581684 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
4 Hb_023161_030 0.2165885088 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_189003_030 0.265325141 - - -
6 Hb_012305_080 0.2663832906 - - -
7 Hb_108768_010 0.2708309965 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_000576_100 0.2709023104 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_003155_060 0.2709108069 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
10 Hb_007749_030 0.293644869 - - -
11 Hb_002536_020 0.302575416 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
12 Hb_017687_010 0.3144364256 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
13 Hb_003487_010 0.3153880389 - - -
14 Hb_004116_010 0.3203786368 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_001172_090 0.3256990724 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_000038_050 0.3407101593 - - -
17 Hb_024446_010 0.3563249159 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_064445_030 0.3563258545 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
19 Hb_003828_010 0.3563263235 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
20 Hb_177166_010 0.3563297113 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_004714_020 Hb_004714_020 Hb_150200_010 Hb_150200_010 Hb_004714_020--Hb_150200_010 Hb_114874_010 Hb_114874_010 Hb_004714_020--Hb_114874_010 Hb_023161_030 Hb_023161_030 Hb_004714_020--Hb_023161_030 Hb_189003_030 Hb_189003_030 Hb_004714_020--Hb_189003_030 Hb_012305_080 Hb_012305_080 Hb_004714_020--Hb_012305_080 Hb_108768_010 Hb_108768_010 Hb_004714_020--Hb_108768_010 Hb_150200_010--Hb_114874_010 Hb_150200_010--Hb_023161_030 Hb_150200_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_150200_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_150200_010--Hb_003155_060 Hb_002536_020 Hb_002536_020 Hb_114874_010--Hb_002536_020 Hb_004116_010 Hb_004116_010 Hb_114874_010--Hb_004116_010 Hb_007749_030 Hb_007749_030 Hb_114874_010--Hb_007749_030 Hb_115572_040 Hb_115572_040 Hb_114874_010--Hb_115572_040 Hb_000038_050 Hb_000038_050 Hb_023161_030--Hb_000038_050 Hb_023161_030--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_023161_030--Hb_017687_010 Hb_023161_030--Hb_012305_080 Hb_189003_030--Hb_150200_010 Hb_189003_030--Hb_000038_050 Hb_189003_030--Hb_012305_080 Hb_189003_030--Hb_017687_010 Hb_012305_080--Hb_150200_010 Hb_001496_140 Hb_001496_140 Hb_012305_080--Hb_001496_140 Hb_002123_030 Hb_002123_030 Hb_012305_080--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_012305_080--Hb_012253_020 Hb_108768_010--Hb_000576_100 Hb_108768_010--Hb_003155_060 Hb_108768_010--Hb_007749_030 Hb_108768_010--Hb_002536_020 Hb_108768_010--Hb_017687_010 Hb_003487_010 Hb_003487_010 Hb_108768_010--Hb_003487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0223219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.047098 0 0 0.0148768 0.0760936

CAGE analysis