Hb_000038_050

Information

Type -
Description -
Location Contig38: 31924-42448
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000038_050 0.0 - - -
2 Hb_002260_260 0.1697712888 - - hypothetical protein VITISV_037667 [Vitis vinifera]
3 Hb_023161_030 0.220161457 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_001496_140 0.27891602 - - -
5 Hb_189003_030 0.3151690878 - - -
6 Hb_017687_010 0.3158850843 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
7 Hb_028751_020 0.3171580658 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
8 Hb_012305_080 0.3252809941 - - -
9 Hb_016834_010 0.326371411 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
10 Hb_150200_010 0.3405788713 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
11 Hb_004714_020 0.3407101593 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_060411_010 0.3443799359 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
13 Hb_000832_350 0.3472419873 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_020411_010 0.365155523 - - phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_003297_040 0.3666423605 - - Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_032705_020 0.3672908736 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_001496_020 0.3680599274 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
18 Hb_006856_020 0.3769565363 - - -
19 Hb_003057_010 0.3818910558 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
20 Hb_033286_020 0.3956075559 - - -

Gene co-expression network

sample Hb_000038_050 Hb_000038_050 Hb_002260_260 Hb_002260_260 Hb_000038_050--Hb_002260_260 Hb_023161_030 Hb_023161_030 Hb_000038_050--Hb_023161_030 Hb_001496_140 Hb_001496_140 Hb_000038_050--Hb_001496_140 Hb_189003_030 Hb_189003_030 Hb_000038_050--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_000038_050--Hb_017687_010 Hb_028751_020 Hb_028751_020 Hb_000038_050--Hb_028751_020 Hb_002260_260--Hb_001496_140 Hb_016834_010 Hb_016834_010 Hb_002260_260--Hb_016834_010 Hb_001496_020 Hb_001496_020 Hb_002260_260--Hb_001496_020 Hb_002260_260--Hb_028751_020 Hb_020411_010 Hb_020411_010 Hb_002260_260--Hb_020411_010 Hb_150200_010 Hb_150200_010 Hb_023161_030--Hb_150200_010 Hb_004714_020 Hb_004714_020 Hb_023161_030--Hb_004714_020 Hb_023161_030--Hb_189003_030 Hb_023161_030--Hb_017687_010 Hb_012305_080 Hb_012305_080 Hb_023161_030--Hb_012305_080 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_002123_030 Hb_002123_030 Hb_001496_140--Hb_002123_030 Hb_001496_140--Hb_016834_010 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_189003_030--Hb_004714_020 Hb_189003_030--Hb_150200_010 Hb_189003_030--Hb_012305_080 Hb_189003_030--Hb_017687_010 Hb_108768_010 Hb_108768_010 Hb_017687_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_017687_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_017687_010--Hb_003155_060 Hb_007749_030 Hb_007749_030 Hb_017687_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_017687_010--Hb_002536_020 Hb_060411_010 Hb_060411_010 Hb_028751_020--Hb_060411_010 Hb_003057_010 Hb_003057_010 Hb_028751_020--Hb_003057_010 Hb_000631_070 Hb_000631_070 Hb_028751_020--Hb_000631_070 Hb_009898_020 Hb_009898_020 Hb_028751_020--Hb_009898_020 Hb_000236_450 Hb_000236_450 Hb_028751_020--Hb_000236_450 Hb_003813_160 Hb_003813_160 Hb_028751_020--Hb_003813_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0319077 0.0281223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0731919 0 0 0.116719 0.114785

CAGE analysis