Hb_028751_020

Information

Type -
Description -
Location Contig28751: 10546-15477
Sequence    

Annotation

kegg
ID rcu:RCOM_0740270
description ATP binding protein, putative
nr
ID XP_012076860.1
description PREDICTED: SCY1-like protein 2 [Jatropha curcas]
swissprot
ID Q8CFE4
description SCY1-like protein 2 OS=Mus musculus GN=Scyl2 PE=1 SV=1
trembl
ID A0A067LAT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17193 PE=4 SV=1
Gene Ontology
ID GO:0004672
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028751_020 0.0 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
2 Hb_060411_010 0.1801276684 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
3 Hb_003057_010 0.2649295441 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
4 Hb_000631_070 0.2742795283 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
5 Hb_009898_020 0.2829766411 - - hypothetical protein JCGZ_23951 [Jatropha curcas]
6 Hb_000236_450 0.2857838197 - - coated vesicle membrane protein, putative [Ricinus communis]
7 Hb_003813_160 0.2865572585 - - -
8 Hb_001595_080 0.2910998194 - - conserved hypothetical protein [Ricinus communis]
9 Hb_052764_110 0.298785742 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
10 Hb_000041_010 0.3009798048 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
11 Hb_002874_040 0.3011547401 - - -
12 Hb_002304_070 0.3034262753 - - -
13 Hb_044187_010 0.304992056 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
14 Hb_000703_270 0.3064015186 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
15 Hb_002419_030 0.3064649984 - - -
16 Hb_032705_020 0.3077162166 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_003206_020 0.3080146241 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
18 Hb_000286_200 0.3125506626 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_001278_070 0.3140139702 - - hypothetical protein glysoja_020139 [Glycine soja]
20 Hb_182831_010 0.3142267257 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_028751_020 Hb_028751_020 Hb_060411_010 Hb_060411_010 Hb_028751_020--Hb_060411_010 Hb_003057_010 Hb_003057_010 Hb_028751_020--Hb_003057_010 Hb_000631_070 Hb_000631_070 Hb_028751_020--Hb_000631_070 Hb_009898_020 Hb_009898_020 Hb_028751_020--Hb_009898_020 Hb_000236_450 Hb_000236_450 Hb_028751_020--Hb_000236_450 Hb_003813_160 Hb_003813_160 Hb_028751_020--Hb_003813_160 Hb_060411_010--Hb_000631_070 Hb_002419_030 Hb_002419_030 Hb_060411_010--Hb_002419_030 Hb_001258_060 Hb_001258_060 Hb_060411_010--Hb_001258_060 Hb_001452_210 Hb_001452_210 Hb_060411_010--Hb_001452_210 Hb_002407_080 Hb_002407_080 Hb_060411_010--Hb_002407_080 Hb_003057_010--Hb_000631_070 Hb_002131_030 Hb_002131_030 Hb_003057_010--Hb_002131_030 Hb_001595_080 Hb_001595_080 Hb_003057_010--Hb_001595_080 Hb_000230_030 Hb_000230_030 Hb_003057_010--Hb_000230_030 Hb_000703_270 Hb_000703_270 Hb_003057_010--Hb_000703_270 Hb_002304_070 Hb_002304_070 Hb_003057_010--Hb_002304_070 Hb_042202_030 Hb_042202_030 Hb_000631_070--Hb_042202_030 Hb_004411_060 Hb_004411_060 Hb_000631_070--Hb_004411_060 Hb_002338_050 Hb_002338_050 Hb_000631_070--Hb_002338_050 Hb_000631_070--Hb_002304_070 Hb_019053_030 Hb_019053_030 Hb_000631_070--Hb_019053_030 Hb_002814_070 Hb_002814_070 Hb_000631_070--Hb_002814_070 Hb_077562_030 Hb_077562_030 Hb_009898_020--Hb_077562_030 Hb_015026_110 Hb_015026_110 Hb_009898_020--Hb_015026_110 Hb_000130_040 Hb_000130_040 Hb_009898_020--Hb_000130_040 Hb_000384_030 Hb_000384_030 Hb_009898_020--Hb_000384_030 Hb_001117_170 Hb_001117_170 Hb_009898_020--Hb_001117_170 Hb_010021_010 Hb_010021_010 Hb_009898_020--Hb_010021_010 Hb_011616_020 Hb_011616_020 Hb_000236_450--Hb_011616_020 Hb_008123_010 Hb_008123_010 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_003805_070 Hb_003805_070 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070 Hb_001233_040 Hb_001233_040 Hb_003813_160--Hb_001233_040 Hb_001604_050 Hb_001604_050 Hb_003813_160--Hb_001604_050 Hb_033661_010 Hb_033661_010 Hb_003813_160--Hb_033661_010 Hb_184403_020 Hb_184403_020 Hb_003813_160--Hb_184403_020 Hb_000753_190 Hb_000753_190 Hb_003813_160--Hb_000753_190 Hb_011249_050 Hb_011249_050 Hb_003813_160--Hb_011249_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457056 0.207789 0 0 1.11682 0.562687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13322 0.667665 0.187222 2.41318 2.06482

CAGE analysis