Hb_001604_050

Information

Type -
Description -
Location Contig1604: 42384-42797
Sequence    

Annotation

kegg
ID rcu:RCOM_0341660
description hypothetical protein
nr
ID XP_012078582.1
description PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14731 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_050 0.0 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
2 Hb_184403_020 0.2014325661 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
3 Hb_000375_310 0.2397037882 - - hypothetical protein JCGZ_18643 [Jatropha curcas]
4 Hb_171469_010 0.2455486103 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
5 Hb_001950_120 0.2461142397 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
6 Hb_101133_020 0.2480179605 - - PREDICTED: 15.7 kDa heat shock protein, peroxisomal [Jatropha curcas]
7 Hb_000449_040 0.248916164 - - protein with unknown function [Ricinus communis]
8 Hb_008667_050 0.2496229252 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
9 Hb_000331_320 0.2513952221 - - -
10 Hb_150379_010 0.2521366212 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
11 Hb_005501_050 0.259426866 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_060618_010 0.2598674073 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
13 Hb_005690_020 0.2602946853 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
14 Hb_017895_030 0.2621537994 transcription factor TF Family: C2H2 -
15 Hb_000795_050 0.2629353202 - - hypothetical protein CISIN_1g0154952mg, partial [Citrus sinensis]
16 Hb_001792_080 0.2637949596 - - unknown [Populus trichocarpa]
17 Hb_002045_270 0.2639769385 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
18 Hb_071130_030 0.2643140257 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
19 Hb_001019_040 0.2653125186 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
20 Hb_001047_160 0.2659986555 - - -

Gene co-expression network

sample Hb_001604_050 Hb_001604_050 Hb_184403_020 Hb_184403_020 Hb_001604_050--Hb_184403_020 Hb_000375_310 Hb_000375_310 Hb_001604_050--Hb_000375_310 Hb_171469_010 Hb_171469_010 Hb_001604_050--Hb_171469_010 Hb_001950_120 Hb_001950_120 Hb_001604_050--Hb_001950_120 Hb_101133_020 Hb_101133_020 Hb_001604_050--Hb_101133_020 Hb_000449_040 Hb_000449_040 Hb_001604_050--Hb_000449_040 Hb_071130_030 Hb_071130_030 Hb_184403_020--Hb_071130_030 Hb_001117_090 Hb_001117_090 Hb_184403_020--Hb_001117_090 Hb_003581_100 Hb_003581_100 Hb_184403_020--Hb_003581_100 Hb_000300_610 Hb_000300_610 Hb_184403_020--Hb_000300_610 Hb_001951_140 Hb_001951_140 Hb_184403_020--Hb_001951_140 Hb_002685_190 Hb_002685_190 Hb_184403_020--Hb_002685_190 Hb_000197_040 Hb_000197_040 Hb_000375_310--Hb_000197_040 Hb_000375_310--Hb_184403_020 Hb_060809_010 Hb_060809_010 Hb_000375_310--Hb_060809_010 Hb_028872_050 Hb_028872_050 Hb_000375_310--Hb_028872_050 Hb_000840_270 Hb_000840_270 Hb_000375_310--Hb_000840_270 Hb_005690_010 Hb_005690_010 Hb_000375_310--Hb_005690_010 Hb_001047_160 Hb_001047_160 Hb_171469_010--Hb_001047_160 Hb_021888_070 Hb_021888_070 Hb_171469_010--Hb_021888_070 Hb_009838_010 Hb_009838_010 Hb_171469_010--Hb_009838_010 Hb_000853_410 Hb_000853_410 Hb_171469_010--Hb_000853_410 Hb_000169_140 Hb_000169_140 Hb_171469_010--Hb_000169_140 Hb_001769_100 Hb_001769_100 Hb_001950_120--Hb_001769_100 Hb_012265_010 Hb_012265_010 Hb_001950_120--Hb_012265_010 Hb_003623_050 Hb_003623_050 Hb_001950_120--Hb_003623_050 Hb_001950_120--Hb_000449_040 Hb_000645_190 Hb_000645_190 Hb_001950_120--Hb_000645_190 Hb_008318_010 Hb_008318_010 Hb_001950_120--Hb_008318_010 Hb_000365_080 Hb_000365_080 Hb_101133_020--Hb_000365_080 Hb_005211_190 Hb_005211_190 Hb_101133_020--Hb_005211_190 Hb_001424_020 Hb_001424_020 Hb_101133_020--Hb_001424_020 Hb_000320_180 Hb_000320_180 Hb_101133_020--Hb_000320_180 Hb_148909_020 Hb_148909_020 Hb_101133_020--Hb_148909_020 Hb_000159_070 Hb_000159_070 Hb_101133_020--Hb_000159_070 Hb_116349_170 Hb_116349_170 Hb_000449_040--Hb_116349_170 Hb_002781_020 Hb_002781_020 Hb_000449_040--Hb_002781_020 Hb_000487_320 Hb_000487_320 Hb_000449_040--Hb_000487_320 Hb_000449_040--Hb_000645_190 Hb_143629_230 Hb_143629_230 Hb_000449_040--Hb_143629_230 Hb_000134_020 Hb_000134_020 Hb_000449_040--Hb_000134_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.386694 0.624513 0 0 0.782078 1.57326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61386 2.63965 0.237155 0.31221 1.04268

CAGE analysis