Hb_001047_160

Information

Type -
Description -
Location Contig1047: 96615-98050
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01619: 96639-96981 , PASA_asmbl_01620: 97553-97739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_160 0.0 - - -
2 Hb_000483_250 0.1976691106 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
3 Hb_060618_010 0.1977093016 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_003966_040 0.2055947455 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_002477_140 0.2061909794 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
6 Hb_007290_080 0.2071719136 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
7 Hb_002609_210 0.2090583971 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
8 Hb_000506_120 0.2171711664 - - hypothetical protein AALP_AA6G154200 [Arabis alpina]
9 Hb_005211_190 0.2192383141 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
10 Hb_000135_060 0.2201615951 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
11 Hb_010815_030 0.2228316714 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
12 Hb_001424_020 0.2230901727 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
13 Hb_009711_020 0.2233632484 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
14 Hb_000753_190 0.224388316 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
15 Hb_003638_070 0.2264534639 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
16 Hb_000881_080 0.2265333976 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005501_050 0.2280376484 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000537_080 0.2292367969 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000030_290 0.2304183822 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
20 Hb_000334_210 0.2318460225 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001047_160 Hb_001047_160 Hb_000483_250 Hb_000483_250 Hb_001047_160--Hb_000483_250 Hb_060618_010 Hb_060618_010 Hb_001047_160--Hb_060618_010 Hb_003966_040 Hb_003966_040 Hb_001047_160--Hb_003966_040 Hb_002477_140 Hb_002477_140 Hb_001047_160--Hb_002477_140 Hb_007290_080 Hb_007290_080 Hb_001047_160--Hb_007290_080 Hb_002609_210 Hb_002609_210 Hb_001047_160--Hb_002609_210 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_000483_250--Hb_060618_010 Hb_000836_140 Hb_000836_140 Hb_000483_250--Hb_000836_140 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000083_090 Hb_000083_090 Hb_000483_250--Hb_000083_090 Hb_060618_010--Hb_000836_140 Hb_002248_100 Hb_002248_100 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_060618_010--Hb_010827_020 Hb_001195_280 Hb_001195_280 Hb_003966_040--Hb_001195_280 Hb_028347_010 Hb_028347_010 Hb_003966_040--Hb_028347_010 Hb_000537_080 Hb_000537_080 Hb_003966_040--Hb_000537_080 Hb_139518_030 Hb_139518_030 Hb_003966_040--Hb_139518_030 Hb_027760_010 Hb_027760_010 Hb_003966_040--Hb_027760_010 Hb_005690_010 Hb_005690_010 Hb_003966_040--Hb_005690_010 Hb_000307_090 Hb_000307_090 Hb_002477_140--Hb_000307_090 Hb_009711_020 Hb_009711_020 Hb_002477_140--Hb_009711_020 Hb_005736_060 Hb_005736_060 Hb_002477_140--Hb_005736_060 Hb_000334_210 Hb_000334_210 Hb_002477_140--Hb_000334_210 Hb_000030_290 Hb_000030_290 Hb_002477_140--Hb_000030_290 Hb_003599_040 Hb_003599_040 Hb_002477_140--Hb_003599_040 Hb_001571_090 Hb_001571_090 Hb_007290_080--Hb_001571_090 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_000329_020 Hb_000329_020 Hb_007290_080--Hb_000329_020 Hb_009384_020 Hb_009384_020 Hb_007290_080--Hb_009384_020 Hb_148909_020 Hb_148909_020 Hb_007290_080--Hb_148909_020 Hb_007290_080--Hb_009711_020 Hb_002609_210--Hb_009711_020 Hb_002609_210--Hb_005211_190 Hb_002609_210--Hb_000030_290 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_002609_210--Hb_000334_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.515457 0.183707 0.142849 0.747133 0.505634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59782 1.84163 0.436841 0.481675 0.48314

CAGE analysis