Hb_171469_010

Information

Type -
Description -
Location Contig171469: 3-566
Sequence    

Annotation

kegg
ID brp:103833451
description cold shock protein 1-like
nr
ID XP_012453109.1
description PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171469_010 0.0 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
2 Hb_001604_050 0.2455486103 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
3 Hb_001047_160 0.2518301228 - - -
4 Hb_021888_070 0.2582224393 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
5 Hb_009838_010 0.2626579893 - - -
6 Hb_000853_410 0.2679595003 - - -
7 Hb_000169_140 0.2685261354 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
8 Hb_002007_190 0.2699036311 - - hypothetical protein RCOM_1432220 [Ricinus communis]
9 Hb_001163_090 0.2719419944 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
10 Hb_003124_060 0.2723412283 - - Beta-ureidopropionase, putative [Ricinus communis]
11 Hb_010997_020 0.273925449 - - -
12 Hb_005501_050 0.2774731625 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_060618_010 0.278320333 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
14 Hb_003294_100 0.2832132981 - - hypothetical protein VITISV_009629 [Vitis vinifera]
15 Hb_000616_040 0.2835222421 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_061802_010 0.2837816869 - - hypothetical protein VITISV_011986 [Vitis vinifera]
17 Hb_002809_150 0.2846778928 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
18 Hb_011484_010 0.2850972679 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_000281_230 0.2855267794 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
20 Hb_001424_020 0.2884065214 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]

Gene co-expression network

sample Hb_171469_010 Hb_171469_010 Hb_001604_050 Hb_001604_050 Hb_171469_010--Hb_001604_050 Hb_001047_160 Hb_001047_160 Hb_171469_010--Hb_001047_160 Hb_021888_070 Hb_021888_070 Hb_171469_010--Hb_021888_070 Hb_009838_010 Hb_009838_010 Hb_171469_010--Hb_009838_010 Hb_000853_410 Hb_000853_410 Hb_171469_010--Hb_000853_410 Hb_000169_140 Hb_000169_140 Hb_171469_010--Hb_000169_140 Hb_184403_020 Hb_184403_020 Hb_001604_050--Hb_184403_020 Hb_000375_310 Hb_000375_310 Hb_001604_050--Hb_000375_310 Hb_001950_120 Hb_001950_120 Hb_001604_050--Hb_001950_120 Hb_101133_020 Hb_101133_020 Hb_001604_050--Hb_101133_020 Hb_000449_040 Hb_000449_040 Hb_001604_050--Hb_000449_040 Hb_000483_250 Hb_000483_250 Hb_001047_160--Hb_000483_250 Hb_060618_010 Hb_060618_010 Hb_001047_160--Hb_060618_010 Hb_003966_040 Hb_003966_040 Hb_001047_160--Hb_003966_040 Hb_002477_140 Hb_002477_140 Hb_001047_160--Hb_002477_140 Hb_007290_080 Hb_007290_080 Hb_001047_160--Hb_007290_080 Hb_002609_210 Hb_002609_210 Hb_001047_160--Hb_002609_210 Hb_002918_050 Hb_002918_050 Hb_021888_070--Hb_002918_050 Hb_001153_020 Hb_001153_020 Hb_021888_070--Hb_001153_020 Hb_021888_070--Hb_009838_010 Hb_011310_080 Hb_011310_080 Hb_021888_070--Hb_011310_080 Hb_021888_070--Hb_000169_140 Hb_001171_050 Hb_001171_050 Hb_021888_070--Hb_001171_050 Hb_000616_040 Hb_000616_040 Hb_009838_010--Hb_000616_040 Hb_003209_200 Hb_003209_200 Hb_009838_010--Hb_003209_200 Hb_000200_290 Hb_000200_290 Hb_009838_010--Hb_000200_290 Hb_003861_120 Hb_003861_120 Hb_009838_010--Hb_003861_120 Hb_000162_140 Hb_000162_140 Hb_009838_010--Hb_000162_140 Hb_000196_080 Hb_000196_080 Hb_009838_010--Hb_000196_080 Hb_168905_010 Hb_168905_010 Hb_000853_410--Hb_168905_010 Hb_001159_120 Hb_001159_120 Hb_000853_410--Hb_001159_120 Hb_005000_070 Hb_005000_070 Hb_000853_410--Hb_005000_070 Hb_000210_220 Hb_000210_220 Hb_000853_410--Hb_000210_220 Hb_061802_010 Hb_061802_010 Hb_000853_410--Hb_061802_010 Hb_009113_070 Hb_009113_070 Hb_000853_410--Hb_009113_070 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.081063 0 0 0.0447593 0.118137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.332609 0.261367 0.150909 0.0358704 0.166843

CAGE analysis