Hb_003209_200

Information

Type transcription factor
Description TF Family: WRKY
Location Contig3209: 110554-116112
Sequence    

Annotation

kegg
ID rcu:RCOM_1621230
description hypothetical protein
nr
ID XP_002512107.1
description hypothetical protein RCOM_1621230 [Ricinus communis]
swissprot
ID Q9C983
description Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1
trembl
ID B9RCV9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1621230 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 57

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33933: 110981-113883 , PASA_asmbl_33935: 114965-115117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_200 0.0 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
2 Hb_000003_270 0.1257067897 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
3 Hb_000196_080 0.1407806626 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
4 Hb_000424_210 0.1418862784 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
5 Hb_002138_010 0.144025735 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
6 Hb_010174_060 0.1470192616 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
7 Hb_012291_030 0.1530044995 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
8 Hb_002600_040 0.1534178166 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
9 Hb_000789_220 0.1536094325 - - phosphofructokinase [Hevea brasiliensis]
10 Hb_000003_040 0.1537857953 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
11 Hb_000616_040 0.1586784467 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_009838_010 0.1604512033 - - -
13 Hb_000200_290 0.1697619517 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
14 Hb_000419_060 0.1712276792 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
15 Hb_012114_040 0.171389067 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000742_110 0.1714302871 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
17 Hb_010560_040 0.1744359866 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
18 Hb_000010_470 0.1745787964 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
19 Hb_181600_010 0.178912927 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
20 Hb_000162_140 0.1791442852 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_200 Hb_003209_200 Hb_000003_270 Hb_000003_270 Hb_003209_200--Hb_000003_270 Hb_000196_080 Hb_000196_080 Hb_003209_200--Hb_000196_080 Hb_000424_210 Hb_000424_210 Hb_003209_200--Hb_000424_210 Hb_002138_010 Hb_002138_010 Hb_003209_200--Hb_002138_010 Hb_010174_060 Hb_010174_060 Hb_003209_200--Hb_010174_060 Hb_012291_030 Hb_012291_030 Hb_003209_200--Hb_012291_030 Hb_000003_270--Hb_002138_010 Hb_001338_040 Hb_001338_040 Hb_000003_270--Hb_001338_040 Hb_000003_270--Hb_012291_030 Hb_006065_010 Hb_006065_010 Hb_000003_270--Hb_006065_010 Hb_000003_270--Hb_000196_080 Hb_000196_080--Hb_000424_210 Hb_000125_030 Hb_000125_030 Hb_000196_080--Hb_000125_030 Hb_003504_020 Hb_003504_020 Hb_000196_080--Hb_003504_020 Hb_000162_140 Hb_000162_140 Hb_000196_080--Hb_000162_140 Hb_003581_260 Hb_003581_260 Hb_000196_080--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000196_080--Hb_007382_150 Hb_002659_040 Hb_002659_040 Hb_000424_210--Hb_002659_040 Hb_001519_030 Hb_001519_030 Hb_000424_210--Hb_001519_030 Hb_093458_050 Hb_093458_050 Hb_000424_210--Hb_093458_050 Hb_000424_210--Hb_000162_140 Hb_000099_130 Hb_000099_130 Hb_000424_210--Hb_000099_130 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_001021_130 Hb_001021_130 Hb_010174_060--Hb_001021_130 Hb_000069_600 Hb_000069_600 Hb_010174_060--Hb_000069_600 Hb_006615_020 Hb_006615_020 Hb_010174_060--Hb_006615_020 Hb_000789_220 Hb_000789_220 Hb_010174_060--Hb_000789_220 Hb_000010_460 Hb_000010_460 Hb_010174_060--Hb_000010_460 Hb_034406_030 Hb_034406_030 Hb_010174_060--Hb_034406_030 Hb_002600_040 Hb_002600_040 Hb_012291_030--Hb_002600_040 Hb_021443_080 Hb_021443_080 Hb_012291_030--Hb_021443_080 Hb_000622_090 Hb_000622_090 Hb_012291_030--Hb_000622_090 Hb_012291_030--Hb_093458_050 Hb_003783_030 Hb_003783_030 Hb_012291_030--Hb_003783_030 Hb_000108_190 Hb_000108_190 Hb_012291_030--Hb_000108_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10154 3.26937 0.825616 1.24109 3.08871 1.03401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7729 6.22747 9.78487 6.79529 1.74562

CAGE analysis