Hb_021888_070

Information

Type -
Description -
Location Contig21888: 64121-65041
Sequence    

Annotation

kegg
ID atr:s00070p00174770
description AMTR_s00070p00174770; hypothetical protein
nr
ID KHN19911.1
description Putative CCR4-associated factor 1 like 11 [Glycine soja]
swissprot
ID -
description -
trembl
ID M0T8E3
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021888_070 0.0 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
2 Hb_002918_050 0.1979055304 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
3 Hb_001153_020 0.2019701588 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
4 Hb_009838_010 0.2022481526 - - -
5 Hb_011310_080 0.2039599049 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
6 Hb_000169_140 0.2067926594 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
7 Hb_001171_050 0.212628562 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
8 Hb_000252_110 0.2138235988 - - -
9 Hb_000419_060 0.2140612902 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
10 Hb_005656_100 0.2142256136 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000853_410 0.2160140416 - - -
12 Hb_000125_210 0.2188594478 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
13 Hb_001357_120 0.2210689721 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
14 Hb_004136_030 0.2213113213 - - -
15 Hb_000616_040 0.2215393321 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_000200_290 0.2220622383 - - PREDICTED: elongator complex protein 2 isoform X1 [Jatropha curcas]
17 Hb_000041_240 0.2240542744 - - glutaredoxin [Hevea brasiliensis]
18 Hb_003849_270 0.227888669 - - -
19 Hb_015690_020 0.2286114348 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
20 Hb_000175_030 0.2288111739 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]

Gene co-expression network

sample Hb_021888_070 Hb_021888_070 Hb_002918_050 Hb_002918_050 Hb_021888_070--Hb_002918_050 Hb_001153_020 Hb_001153_020 Hb_021888_070--Hb_001153_020 Hb_009838_010 Hb_009838_010 Hb_021888_070--Hb_009838_010 Hb_011310_080 Hb_011310_080 Hb_021888_070--Hb_011310_080 Hb_000169_140 Hb_000169_140 Hb_021888_070--Hb_000169_140 Hb_001171_050 Hb_001171_050 Hb_021888_070--Hb_001171_050 Hb_000052_020 Hb_000052_020 Hb_002918_050--Hb_000052_020 Hb_000997_360 Hb_000997_360 Hb_002918_050--Hb_000997_360 Hb_003734_110 Hb_003734_110 Hb_002918_050--Hb_003734_110 Hb_000125_210 Hb_000125_210 Hb_002918_050--Hb_000125_210 Hb_007747_210 Hb_007747_210 Hb_002918_050--Hb_007747_210 Hb_042202_030 Hb_042202_030 Hb_002918_050--Hb_042202_030 Hb_021443_080 Hb_021443_080 Hb_001153_020--Hb_021443_080 Hb_000635_210 Hb_000635_210 Hb_001153_020--Hb_000635_210 Hb_168905_010 Hb_168905_010 Hb_001153_020--Hb_168905_010 Hb_000200_290 Hb_000200_290 Hb_001153_020--Hb_000200_290 Hb_001153_020--Hb_000997_360 Hb_001153_020--Hb_000125_210 Hb_000616_040 Hb_000616_040 Hb_009838_010--Hb_000616_040 Hb_003209_200 Hb_003209_200 Hb_009838_010--Hb_003209_200 Hb_009838_010--Hb_000200_290 Hb_003861_120 Hb_003861_120 Hb_009838_010--Hb_003861_120 Hb_000162_140 Hb_000162_140 Hb_009838_010--Hb_000162_140 Hb_000196_080 Hb_000196_080 Hb_009838_010--Hb_000196_080 Hb_009615_120 Hb_009615_120 Hb_011310_080--Hb_009615_120 Hb_000670_100 Hb_000670_100 Hb_011310_080--Hb_000670_100 Hb_000001_130 Hb_000001_130 Hb_011310_080--Hb_000001_130 Hb_000920_130 Hb_000920_130 Hb_011310_080--Hb_000920_130 Hb_002704_070 Hb_002704_070 Hb_011310_080--Hb_002704_070 Hb_000122_210 Hb_000122_210 Hb_011310_080--Hb_000122_210 Hb_000210_220 Hb_000210_220 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030 Hb_000673_020 Hb_000673_020 Hb_001171_050--Hb_000673_020 Hb_000934_190 Hb_000934_190 Hb_001171_050--Hb_000934_190 Hb_015183_060 Hb_015183_060 Hb_001171_050--Hb_015183_060 Hb_005656_100 Hb_005656_100 Hb_001171_050--Hb_005656_100 Hb_002016_080 Hb_002016_080 Hb_001171_050--Hb_002016_080 Hb_013405_140 Hb_013405_140 Hb_001171_050--Hb_013405_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0266809 0.116157 0.0200513 0.0219495 0.0250198 0.0235597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306429 0.192774 0.175469 0.0973008 0.194832

CAGE analysis