Hb_000670_100

Information

Type -
Description -
Location Contig670: 144124-148804
Sequence    

Annotation

kegg
ID pop:POPTR_0014s02290g
description hypothetical protein
nr
ID XP_012068288.1
description PREDICTED: D-3-phosphoglycerate dehydrogenase 3, chloroplastic-like [Jatropha curcas]
swissprot
ID O49485
description D-3-phosphoglycerate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=PGDH1 PE=1 SV=1
trembl
ID A0A067L3A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16090 PE=3 SV=1
Gene Ontology
ID GO:0005739
description d-3-phosphoglycerate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53403: 144178-147746
cDNA
(Sanger)
(ID:Location)		 025_D19r.ab1: 147715-148564

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000670_100 0.0 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 3, chloroplastic-like [Jatropha curcas]
2 Hb_004108_060 0.1478523728 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
3 Hb_000297_150 0.1505247858 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
4 Hb_012627_040 0.1553912514 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
5 Hb_000282_080 0.1602708999 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004241_020 0.1677263893 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]
7 Hb_011310_080 0.1717581447 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
8 Hb_001227_090 0.1729982301 - - peroxiredoxin, putative [Ricinus communis]
9 Hb_000465_190 0.1748998644 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X2 [Jatropha curcas]
10 Hb_155832_010 0.1750703103 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_000788_020 0.1764305228 - - PREDICTED: uncharacterized protein LOC105629709 isoform X1 [Jatropha curcas]
12 Hb_009778_060 0.1764585587 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
13 Hb_000340_100 0.1765693574 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
14 Hb_001195_450 0.1771675207 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
15 Hb_000340_150 0.182886316 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
16 Hb_000529_180 0.1831700654 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
17 Hb_001723_060 0.1841571376 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
18 Hb_007747_210 0.1850525782 - - unnamed protein product [Vitis vinifera]
19 Hb_003734_110 0.1851758286 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
20 Hb_000007_010 0.1894443325 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000670_100 Hb_000670_100 Hb_004108_060 Hb_004108_060 Hb_000670_100--Hb_004108_060 Hb_000297_150 Hb_000297_150 Hb_000670_100--Hb_000297_150 Hb_012627_040 Hb_012627_040 Hb_000670_100--Hb_012627_040 Hb_000282_080 Hb_000282_080 Hb_000670_100--Hb_000282_080 Hb_004241_020 Hb_004241_020 Hb_000670_100--Hb_004241_020 Hb_011310_080 Hb_011310_080 Hb_000670_100--Hb_011310_080 Hb_002660_190 Hb_002660_190 Hb_004108_060--Hb_002660_190 Hb_001472_160 Hb_001472_160 Hb_004108_060--Hb_001472_160 Hb_002282_070 Hb_002282_070 Hb_004108_060--Hb_002282_070 Hb_000529_180 Hb_000529_180 Hb_004108_060--Hb_000529_180 Hb_001377_040 Hb_001377_040 Hb_004108_060--Hb_001377_040 Hb_001427_040 Hb_001427_040 Hb_004108_060--Hb_001427_040 Hb_000297_150--Hb_004241_020 Hb_000340_100 Hb_000340_100 Hb_000297_150--Hb_000340_100 Hb_000465_190 Hb_000465_190 Hb_000297_150--Hb_000465_190 Hb_003747_230 Hb_003747_230 Hb_000297_150--Hb_003747_230 Hb_000702_080 Hb_000702_080 Hb_000297_150--Hb_000702_080 Hb_000173_250 Hb_000173_250 Hb_000297_150--Hb_000173_250 Hb_000120_290 Hb_000120_290 Hb_012627_040--Hb_000120_290 Hb_005731_160 Hb_005731_160 Hb_012627_040--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_012627_040--Hb_002811_010 Hb_012627_040--Hb_000282_080 Hb_002758_010 Hb_002758_010 Hb_012627_040--Hb_002758_010 Hb_012627_040--Hb_000465_190 Hb_005511_140 Hb_005511_140 Hb_000282_080--Hb_005511_140 Hb_001195_450 Hb_001195_450 Hb_000282_080--Hb_001195_450 Hb_001314_080 Hb_001314_080 Hb_000282_080--Hb_001314_080 Hb_000282_080--Hb_002758_010 Hb_000023_260 Hb_000023_260 Hb_000282_080--Hb_000023_260 Hb_001080_090 Hb_001080_090 Hb_000282_080--Hb_001080_090 Hb_004241_020--Hb_000702_080 Hb_004241_020--Hb_000173_250 Hb_000580_150 Hb_000580_150 Hb_004241_020--Hb_000580_150 Hb_004241_020--Hb_000465_190 Hb_009775_010 Hb_009775_010 Hb_004241_020--Hb_009775_010 Hb_009615_120 Hb_009615_120 Hb_011310_080--Hb_009615_120 Hb_000001_130 Hb_000001_130 Hb_011310_080--Hb_000001_130 Hb_000920_130 Hb_000920_130 Hb_011310_080--Hb_000920_130 Hb_002704_070 Hb_002704_070 Hb_011310_080--Hb_002704_070 Hb_000122_210 Hb_000122_210 Hb_011310_080--Hb_000122_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.08728 15.5225 15.6213 4.32925 5.7795 6.66662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2282 10.0918 13.8299 14.7261 39.3906

CAGE analysis