Hb_003861_120

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig3861: 139558-142986
Sequence    

Annotation

kegg
ID rcu:RCOM_0834700
description transcription factor, putative
nr
ID XP_002532423.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q7X9B9
description Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3
trembl
ID B9T2F4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0834700 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein nlp2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_120 0.0 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
2 Hb_002929_050 0.1403707337 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
3 Hb_010710_020 0.1754401825 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
4 Hb_009838_010 0.1771844664 - - -
5 Hb_001538_100 0.1776232773 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
6 Hb_003097_210 0.1797793217 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
7 Hb_000446_030 0.1853086176 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_012660_020 0.186737111 - - -
9 Hb_000742_110 0.1871589115 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
10 Hb_001688_020 0.1878938777 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
11 Hb_000329_650 0.1887100576 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
12 Hb_010560_040 0.1897867656 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
13 Hb_000616_040 0.1898654917 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_000923_050 0.1922757277 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
15 Hb_011828_020 0.1933128025 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
16 Hb_075653_020 0.1937898021 - - -
17 Hb_021056_020 0.1939978638 - - plasma membrane H+-ATPase [Hevea brasiliensis]
18 Hb_000395_080 0.1967852889 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
19 Hb_001950_120 0.197449693 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
20 Hb_000120_590 0.1974877813 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]

Gene co-expression network

sample Hb_003861_120 Hb_003861_120 Hb_002929_050 Hb_002929_050 Hb_003861_120--Hb_002929_050 Hb_010710_020 Hb_010710_020 Hb_003861_120--Hb_010710_020 Hb_009838_010 Hb_009838_010 Hb_003861_120--Hb_009838_010 Hb_001538_100 Hb_001538_100 Hb_003861_120--Hb_001538_100 Hb_003097_210 Hb_003097_210 Hb_003861_120--Hb_003097_210 Hb_000446_030 Hb_000446_030 Hb_003861_120--Hb_000446_030 Hb_002929_050--Hb_001538_100 Hb_002929_050--Hb_000446_030 Hb_174865_030 Hb_174865_030 Hb_002929_050--Hb_174865_030 Hb_002540_030 Hb_002540_030 Hb_002929_050--Hb_002540_030 Hb_000483_250 Hb_000483_250 Hb_002929_050--Hb_000483_250 Hb_010710_020--Hb_001538_100 Hb_003680_070 Hb_003680_070 Hb_010710_020--Hb_003680_070 Hb_001153_080 Hb_001153_080 Hb_010710_020--Hb_001153_080 Hb_000163_200 Hb_000163_200 Hb_010710_020--Hb_000163_200 Hb_000261_460 Hb_000261_460 Hb_010710_020--Hb_000261_460 Hb_030565_070 Hb_030565_070 Hb_010710_020--Hb_030565_070 Hb_000616_040 Hb_000616_040 Hb_009838_010--Hb_000616_040 Hb_003209_200 Hb_003209_200 Hb_009838_010--Hb_003209_200 Hb_000200_290 Hb_000200_290 Hb_009838_010--Hb_000200_290 Hb_000162_140 Hb_000162_140 Hb_009838_010--Hb_000162_140 Hb_000196_080 Hb_000196_080 Hb_009838_010--Hb_000196_080 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010 Hb_155764_010 Hb_155764_010 Hb_003097_210--Hb_155764_010 Hb_010560_040 Hb_010560_040 Hb_003097_210--Hb_010560_040 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003097_210--Hb_000865_070 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000987_120 Hb_000987_120 Hb_000446_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_000446_030--Hb_174865_030 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.223355 0.365633 0.113347 0.00488961 0.22376 0.676063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46574 0.95281 0.59863 0.696527 0.106815

CAGE analysis