Hb_168905_010

Information

Type -
Description -
Location Contig168905: 56-1320
Sequence    

Annotation

kegg
ID rcu:RCOM_1563770
description clathrin coat assembly protein ap19, putative
nr
ID XP_012573027.1
description PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
swissprot
ID Q8LEZ8
description AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=1 SV=1
trembl
ID B9RKW9
description Clathrin coat assembly protein ap19, putative OS=Ricinus communis GN=RCOM_1563770 PE=4 SV=1
Gene Ontology
ID GO:0030117
description ap-1 complex subunit sigma-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168905_010 0.0 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
2 Hb_021443_080 0.1227405689 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
3 Hb_001218_040 0.1234147938 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
4 Hb_011671_390 0.1247337178 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
5 Hb_000997_360 0.1267834397 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
6 Hb_001616_030 0.1290190514 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
7 Hb_001153_020 0.1312115127 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
8 Hb_000563_250 0.1324183115 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
9 Hb_000962_040 0.1330619546 - - heat shock protein binding protein, putative [Ricinus communis]
10 Hb_000224_140 0.1350783604 - - ribonuclease z, chloroplast, putative [Ricinus communis]
11 Hb_011512_040 0.1351413003 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
12 Hb_000634_040 0.1378827318 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
13 Hb_000853_410 0.139322765 - - -
14 Hb_000530_070 0.1401194239 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
15 Hb_001775_110 0.1405063205 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
16 Hb_000318_160 0.1423534953 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
17 Hb_000398_040 0.1427238023 - - Auxin response factor, putative [Ricinus communis]
18 Hb_001076_020 0.1434610402 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_003349_080 0.1438454054 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
20 Hb_000635_210 0.1439955789 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_168905_010 Hb_168905_010 Hb_021443_080 Hb_021443_080 Hb_168905_010--Hb_021443_080 Hb_001218_040 Hb_001218_040 Hb_168905_010--Hb_001218_040 Hb_011671_390 Hb_011671_390 Hb_168905_010--Hb_011671_390 Hb_000997_360 Hb_000997_360 Hb_168905_010--Hb_000997_360 Hb_001616_030 Hb_001616_030 Hb_168905_010--Hb_001616_030 Hb_001153_020 Hb_001153_020 Hb_168905_010--Hb_001153_020 Hb_012291_030 Hb_012291_030 Hb_021443_080--Hb_012291_030 Hb_021443_080--Hb_001153_020 Hb_001775_110 Hb_001775_110 Hb_021443_080--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_021443_080--Hb_000398_040 Hb_001314_040 Hb_001314_040 Hb_021443_080--Hb_001314_040 Hb_001396_100 Hb_001396_100 Hb_001218_040--Hb_001396_100 Hb_000224_140 Hb_000224_140 Hb_001218_040--Hb_000224_140 Hb_001904_090 Hb_001904_090 Hb_001218_040--Hb_001904_090 Hb_003349_080 Hb_003349_080 Hb_001218_040--Hb_003349_080 Hb_001218_040--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_001218_040--Hb_000680_140 Hb_004846_090 Hb_004846_090 Hb_011671_390--Hb_004846_090 Hb_028487_030 Hb_028487_030 Hb_011671_390--Hb_028487_030 Hb_011671_390--Hb_001616_030 Hb_028486_030 Hb_028486_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_000997_360--Hb_001218_040 Hb_000997_360--Hb_021443_080 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_153112_030 Hb_153112_030 Hb_001616_030--Hb_153112_030 Hb_001153_020--Hb_000635_210 Hb_000200_290 Hb_000200_290 Hb_001153_020--Hb_000200_290 Hb_001153_020--Hb_000997_360 Hb_001153_020--Hb_000125_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6168 5.91165 15.6556 4.64807 15.259 6.38968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.0571 52.3379 45.2861 13.2339 24.505

CAGE analysis