Hb_000375_310

Information

Type -
Description -
Location Contig375: 306941-308031
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05730g
description POPTRDRAFT_1071364; hypothetical protein
nr
ID KDP29708.1
description hypothetical protein JCGZ_18643 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18643 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38269: 307337-308034
cDNA
(Sanger)
(ID:Location)		 011_A14.ab1: 307390-308034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_310 0.0 - - hypothetical protein JCGZ_18643 [Jatropha curcas]
2 Hb_000197_040 0.1486194811 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
3 Hb_184403_020 0.1520906134 - - PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera]
4 Hb_060809_010 0.173513334 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
5 Hb_028872_050 0.1784105142 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
6 Hb_000840_270 0.179022952 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
7 Hb_005690_010 0.1836787426 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
8 Hb_002408_010 0.1868607461 - - cation-transporting atpase plant, putative [Ricinus communis]
9 Hb_002942_020 0.1883746255 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_004117_290 0.1887142149 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000984_190 0.1890280533 - - -
12 Hb_000268_090 0.193111776 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
13 Hb_015807_010 0.1940279566 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
14 Hb_000963_190 0.1958388356 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
15 Hb_071130_030 0.1964066194 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
16 Hb_002045_270 0.1964465128 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
17 Hb_007101_100 0.1973576156 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
18 Hb_000300_610 0.1974654451 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
19 Hb_001951_140 0.1981167043 - - PREDICTED: uncharacterized protein LOC105649757 isoform X1 [Jatropha curcas]
20 Hb_005488_060 0.1982639726 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000375_310 Hb_000375_310 Hb_000197_040 Hb_000197_040 Hb_000375_310--Hb_000197_040 Hb_184403_020 Hb_184403_020 Hb_000375_310--Hb_184403_020 Hb_060809_010 Hb_060809_010 Hb_000375_310--Hb_060809_010 Hb_028872_050 Hb_028872_050 Hb_000375_310--Hb_028872_050 Hb_000840_270 Hb_000840_270 Hb_000375_310--Hb_000840_270 Hb_005690_010 Hb_005690_010 Hb_000375_310--Hb_005690_010 Hb_002408_010 Hb_002408_010 Hb_000197_040--Hb_002408_010 Hb_002942_020 Hb_002942_020 Hb_000197_040--Hb_002942_020 Hb_033642_020 Hb_033642_020 Hb_000197_040--Hb_033642_020 Hb_003106_130 Hb_003106_130 Hb_000197_040--Hb_003106_130 Hb_000025_760 Hb_000025_760 Hb_000197_040--Hb_000025_760 Hb_002235_150 Hb_002235_150 Hb_000197_040--Hb_002235_150 Hb_071130_030 Hb_071130_030 Hb_184403_020--Hb_071130_030 Hb_001117_090 Hb_001117_090 Hb_184403_020--Hb_001117_090 Hb_003581_100 Hb_003581_100 Hb_184403_020--Hb_003581_100 Hb_000300_610 Hb_000300_610 Hb_184403_020--Hb_000300_610 Hb_001951_140 Hb_001951_140 Hb_184403_020--Hb_001951_140 Hb_002685_190 Hb_002685_190 Hb_184403_020--Hb_002685_190 Hb_000317_430 Hb_000317_430 Hb_060809_010--Hb_000317_430 Hb_000035_380 Hb_000035_380 Hb_060809_010--Hb_000035_380 Hb_003125_040 Hb_003125_040 Hb_060809_010--Hb_003125_040 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_000175_070 Hb_000175_070 Hb_060809_010--Hb_000175_070 Hb_003005_020 Hb_003005_020 Hb_060809_010--Hb_003005_020 Hb_002111_050 Hb_002111_050 Hb_028872_050--Hb_002111_050 Hb_011224_080 Hb_011224_080 Hb_028872_050--Hb_011224_080 Hb_002659_140 Hb_002659_140 Hb_028872_050--Hb_002659_140 Hb_004650_070 Hb_004650_070 Hb_028872_050--Hb_004650_070 Hb_000352_110 Hb_000352_110 Hb_028872_050--Hb_000352_110 Hb_006816_290 Hb_006816_290 Hb_028872_050--Hb_006816_290 Hb_000840_270--Hb_003106_130 Hb_000157_030 Hb_000157_030 Hb_000840_270--Hb_000157_030 Hb_000840_270--Hb_000025_760 Hb_000840_270--Hb_002235_150 Hb_000840_270--Hb_002408_010 Hb_008578_010 Hb_008578_010 Hb_000840_270--Hb_008578_010 Hb_015978_060 Hb_015978_060 Hb_005690_010--Hb_015978_060 Hb_070739_010 Hb_070739_010 Hb_005690_010--Hb_070739_010 Hb_000154_080 Hb_000154_080 Hb_005690_010--Hb_000154_080 Hb_000003_080 Hb_000003_080 Hb_005690_010--Hb_000003_080 Hb_000462_140 Hb_000462_140 Hb_005690_010--Hb_000462_140 Hb_005690_010--Hb_002685_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.0969 19.435 7.84212 7.29529 136.178 117.837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.694 90.1244 35.1219 20.748 59.4347

CAGE analysis