Hb_000025_760

Information

Type -
Description -
Location Contig25: 710761-711349
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26177: 710763-711182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_760 0.0 - - -
2 Hb_033642_020 0.0952127553 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
3 Hb_003106_130 0.112683341 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
4 Hb_002955_010 0.1131816343 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
5 Hb_001758_020 0.1155893138 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010298_010 0.1167502207 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
7 Hb_003911_040 0.1218376527 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
8 Hb_000237_230 0.1235367893 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
9 Hb_000197_040 0.1258167096 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
10 Hb_009615_110 0.1276364224 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
11 Hb_028900_020 0.1292632799 - - unnamed protein product [Coffea canephora]
12 Hb_000840_270 0.131533109 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
13 Hb_000258_410 0.1328927433 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
14 Hb_002235_360 0.1367465137 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
15 Hb_000997_060 0.1369225671 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
16 Hb_000116_110 0.138034024 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
17 Hb_000453_270 0.1387894573 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
18 Hb_000256_270 0.1400671752 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
19 Hb_000703_080 0.1407318997 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
20 Hb_001369_060 0.1435506863 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_760 Hb_000025_760 Hb_033642_020 Hb_033642_020 Hb_000025_760--Hb_033642_020 Hb_003106_130 Hb_003106_130 Hb_000025_760--Hb_003106_130 Hb_002955_010 Hb_002955_010 Hb_000025_760--Hb_002955_010 Hb_001758_020 Hb_001758_020 Hb_000025_760--Hb_001758_020 Hb_010298_010 Hb_010298_010 Hb_000025_760--Hb_010298_010 Hb_003911_040 Hb_003911_040 Hb_000025_760--Hb_003911_040 Hb_028900_020 Hb_028900_020 Hb_033642_020--Hb_028900_020 Hb_000077_050 Hb_000077_050 Hb_033642_020--Hb_000077_050 Hb_000176_110 Hb_000176_110 Hb_033642_020--Hb_000176_110 Hb_033642_020--Hb_003106_130 Hb_024714_030 Hb_024714_030 Hb_033642_020--Hb_024714_030 Hb_003120_060 Hb_003120_060 Hb_003106_130--Hb_003120_060 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_000019_230 Hb_000019_230 Hb_003106_130--Hb_000019_230 Hb_002235_150 Hb_002235_150 Hb_003106_130--Hb_002235_150 Hb_000256_270 Hb_000256_270 Hb_002955_010--Hb_000256_270 Hb_000732_020 Hb_000732_020 Hb_002955_010--Hb_000732_020 Hb_009615_110 Hb_009615_110 Hb_002955_010--Hb_009615_110 Hb_000372_040 Hb_000372_040 Hb_002955_010--Hb_000372_040 Hb_000684_180 Hb_000684_180 Hb_002955_010--Hb_000684_180 Hb_002986_050 Hb_002986_050 Hb_002955_010--Hb_002986_050 Hb_000237_230 Hb_000237_230 Hb_001758_020--Hb_000237_230 Hb_006922_080 Hb_006922_080 Hb_001758_020--Hb_006922_080 Hb_001758_020--Hb_002955_010 Hb_000840_270 Hb_000840_270 Hb_001758_020--Hb_000840_270 Hb_005228_080 Hb_005228_080 Hb_001758_020--Hb_005228_080 Hb_000671_100 Hb_000671_100 Hb_010298_010--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_010298_010--Hb_010261_020 Hb_010298_010--Hb_024714_030 Hb_010298_010--Hb_033642_020 Hb_000977_310 Hb_000977_310 Hb_010298_010--Hb_000977_310 Hb_000307_200 Hb_000307_200 Hb_010298_010--Hb_000307_200 Hb_007632_250 Hb_007632_250 Hb_003911_040--Hb_007632_250 Hb_000035_380 Hb_000035_380 Hb_003911_040--Hb_000035_380 Hb_000997_060 Hb_000997_060 Hb_003911_040--Hb_000997_060 Hb_017895_050 Hb_017895_050 Hb_003911_040--Hb_017895_050 Hb_006637_060 Hb_006637_060 Hb_003911_040--Hb_006637_060 Hb_003911_040--Hb_119583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6996 8.4359 3.97961 2.61505 28.1454 41.0181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6628 12.3789 6.62855 4.00691 3.07348

CAGE analysis