Hb_001758_020

Information

Type -
Description -
Location Contig1758: 29122-29403
Sequence    

Annotation

kegg
ID rcu:RCOM_1158120
description hypothetical protein
nr
ID XP_002529873.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LZM5
description CASP-like protein 5B1 OS=Arabidopsis thaliana GN=At5g02060 PE=2 SV=1
trembl
ID B9SV54
description CASP-like protein OS=Ricinus communis GN=RCOM_1158120 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16833: 28820-29070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000025_760 0.1155893138 - - -
3 Hb_000237_230 0.1209621836 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
4 Hb_006922_080 0.135982781 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
5 Hb_002955_010 0.1482278517 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
6 Hb_000840_270 0.1506862319 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
7 Hb_005228_080 0.1507391584 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
8 Hb_028900_020 0.1507981886 - - unnamed protein product [Coffea canephora]
9 Hb_000256_270 0.1511226664 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
10 Hb_033642_020 0.1517093915 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
11 Hb_003106_130 0.1566655626 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
12 Hb_000116_170 0.1579349683 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
13 Hb_188964_010 0.1584355532 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
14 Hb_004669_040 0.1590321689 - - ATPase inhibitor, putative [Ricinus communis]
15 Hb_002408_010 0.1616386303 - - cation-transporting atpase plant, putative [Ricinus communis]
16 Hb_000258_410 0.1620809255 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
17 Hb_000771_160 0.1624107961 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
18 Hb_007441_340 0.1625375766 - - protein with unknown function [Ricinus communis]
19 Hb_003453_020 0.1633544251 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
20 Hb_000661_160 0.1633715438 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_001758_020 Hb_001758_020 Hb_000025_760 Hb_000025_760 Hb_001758_020--Hb_000025_760 Hb_000237_230 Hb_000237_230 Hb_001758_020--Hb_000237_230 Hb_006922_080 Hb_006922_080 Hb_001758_020--Hb_006922_080 Hb_002955_010 Hb_002955_010 Hb_001758_020--Hb_002955_010 Hb_000840_270 Hb_000840_270 Hb_001758_020--Hb_000840_270 Hb_005228_080 Hb_005228_080 Hb_001758_020--Hb_005228_080 Hb_033642_020 Hb_033642_020 Hb_000025_760--Hb_033642_020 Hb_003106_130 Hb_003106_130 Hb_000025_760--Hb_003106_130 Hb_000025_760--Hb_002955_010 Hb_010298_010 Hb_010298_010 Hb_000025_760--Hb_010298_010 Hb_003911_040 Hb_003911_040 Hb_000025_760--Hb_003911_040 Hb_000258_410 Hb_000258_410 Hb_000237_230--Hb_000258_410 Hb_000732_020 Hb_000732_020 Hb_000237_230--Hb_000732_020 Hb_000814_090 Hb_000814_090 Hb_000237_230--Hb_000814_090 Hb_000176_110 Hb_000176_110 Hb_000237_230--Hb_000176_110 Hb_000237_230--Hb_002955_010 Hb_000645_150 Hb_000645_150 Hb_000237_230--Hb_000645_150 Hb_000012_090 Hb_000012_090 Hb_006922_080--Hb_000012_090 Hb_003453_020 Hb_003453_020 Hb_006922_080--Hb_003453_020 Hb_000116_170 Hb_000116_170 Hb_006922_080--Hb_000116_170 Hb_006922_080--Hb_000176_110 Hb_009118_010 Hb_009118_010 Hb_006922_080--Hb_009118_010 Hb_003656_130 Hb_003656_130 Hb_006922_080--Hb_003656_130 Hb_000256_270 Hb_000256_270 Hb_002955_010--Hb_000256_270 Hb_002955_010--Hb_000732_020 Hb_009615_110 Hb_009615_110 Hb_002955_010--Hb_009615_110 Hb_000372_040 Hb_000372_040 Hb_002955_010--Hb_000372_040 Hb_000684_180 Hb_000684_180 Hb_002955_010--Hb_000684_180 Hb_002986_050 Hb_002986_050 Hb_002955_010--Hb_002986_050 Hb_000840_270--Hb_003106_130 Hb_000157_030 Hb_000157_030 Hb_000840_270--Hb_000157_030 Hb_000840_270--Hb_000025_760 Hb_002235_150 Hb_002235_150 Hb_000840_270--Hb_002235_150 Hb_002408_010 Hb_002408_010 Hb_000840_270--Hb_002408_010 Hb_008578_010 Hb_008578_010 Hb_000840_270--Hb_008578_010 Hb_188964_010 Hb_188964_010 Hb_005228_080--Hb_188964_010 Hb_004567_100 Hb_004567_100 Hb_005228_080--Hb_004567_100 Hb_002687_190 Hb_002687_190 Hb_005228_080--Hb_002687_190 Hb_002235_320 Hb_002235_320 Hb_005228_080--Hb_002235_320 Hb_000003_790 Hb_000003_790 Hb_005228_080--Hb_000003_790 Hb_003581_020 Hb_003581_020 Hb_005228_080--Hb_003581_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08182 2.91586 2.52928 2.03467 14.5826 13.0541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.8003 3.47207 2.86258 1.7805 0.516049

CAGE analysis