Hb_000230_030

Information

Type -
Description -
Location Contig230: 33394-44378
Sequence    

Annotation

kegg
ID csv:101226700
description cysteine synthase-like
nr
ID KJB82552.1
description hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SH84
description Gossypium raimondii chromosome 13, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_013G2021001 PE=4 SV=1
Gene Ontology
ID GO:0016829
description cysteine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_030 0.0 - - hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
2 Hb_000635_260 0.1793052308 - - PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
3 Hb_003057_010 0.1875174429 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
4 Hb_000574_460 0.2074630424 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
5 Hb_002131_030 0.2183669225 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
6 Hb_003124_020 0.2233971766 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
7 Hb_132998_010 0.2240021872 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
8 Hb_006738_020 0.2363758946 - - hypothetical protein VITISV_010510 [Vitis vinifera]
9 Hb_000203_140 0.2375588483 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
10 Hb_000703_270 0.2417732519 - - hypothetical protein B456_012G039600 [Gossypium raimondii]
11 Hb_001493_120 0.2418393629 - - -
12 Hb_000563_190 0.2439784921 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
13 Hb_000159_130 0.2547627537 - - RNA binding protein, putative [Ricinus communis]
14 Hb_001490_030 0.257173163 - - PREDICTED: psbP domain-containing protein 6, chloroplastic [Jatropha curcas]
15 Hb_003683_080 0.2610066286 - - Angio-associated migratory cell protein, putative [Ricinus communis]
16 Hb_001366_070 0.2610803112 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
17 Hb_099136_010 0.2615669227 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
18 Hb_002400_150 0.2631491284 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
19 Hb_001221_340 0.266120042 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
20 Hb_000510_240 0.267347802 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000230_030 Hb_000230_030 Hb_000635_260 Hb_000635_260 Hb_000230_030--Hb_000635_260 Hb_003057_010 Hb_003057_010 Hb_000230_030--Hb_003057_010 Hb_000574_460 Hb_000574_460 Hb_000230_030--Hb_000574_460 Hb_002131_030 Hb_002131_030 Hb_000230_030--Hb_002131_030 Hb_003124_020 Hb_003124_020 Hb_000230_030--Hb_003124_020 Hb_132998_010 Hb_132998_010 Hb_000230_030--Hb_132998_010 Hb_048573_010 Hb_048573_010 Hb_000635_260--Hb_048573_010 Hb_000159_130 Hb_000159_130 Hb_000635_260--Hb_000159_130 Hb_000635_260--Hb_002131_030 Hb_011282_020 Hb_011282_020 Hb_000635_260--Hb_011282_020 Hb_099136_010 Hb_099136_010 Hb_000635_260--Hb_099136_010 Hb_000631_070 Hb_000631_070 Hb_003057_010--Hb_000631_070 Hb_003057_010--Hb_002131_030 Hb_001595_080 Hb_001595_080 Hb_003057_010--Hb_001595_080 Hb_000703_270 Hb_000703_270 Hb_003057_010--Hb_000703_270 Hb_002304_070 Hb_002304_070 Hb_003057_010--Hb_002304_070 Hb_001493_120 Hb_001493_120 Hb_000574_460--Hb_001493_120 Hb_073490_020 Hb_073490_020 Hb_000574_460--Hb_073490_020 Hb_001490_030 Hb_001490_030 Hb_000574_460--Hb_001490_030 Hb_091194_010 Hb_091194_010 Hb_000574_460--Hb_091194_010 Hb_006738_020 Hb_006738_020 Hb_000574_460--Hb_006738_020 Hb_000429_090 Hb_000429_090 Hb_000574_460--Hb_000429_090 Hb_000197_220 Hb_000197_220 Hb_002131_030--Hb_000197_220 Hb_000203_140 Hb_000203_140 Hb_002131_030--Hb_000203_140 Hb_100886_010 Hb_100886_010 Hb_002131_030--Hb_100886_010 Hb_002338_050 Hb_002338_050 Hb_002131_030--Hb_002338_050 Hb_001221_340 Hb_001221_340 Hb_002131_030--Hb_001221_340 Hb_000510_240 Hb_000510_240 Hb_002131_030--Hb_000510_240 Hb_003124_020--Hb_003057_010 Hb_003124_020--Hb_132998_010 Hb_003124_020--Hb_006738_020 Hb_003124_020--Hb_000574_460 Hb_002243_070 Hb_002243_070 Hb_003124_020--Hb_002243_070 Hb_000286_090 Hb_000286_090 Hb_132998_010--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_132998_010--Hb_001163_090 Hb_021888_060 Hb_021888_060 Hb_132998_010--Hb_021888_060 Hb_002289_090 Hb_002289_090 Hb_132998_010--Hb_002289_090 Hb_132998_010--Hb_001493_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0299873 0.166525 0.0318996 0.0357726 0.188062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.411063 0.387776 0.115169 0.473569 0.510556

CAGE analysis