Hb_001163_090

Information

Type -
Description -
Location Contig1163: 87800-88849
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14920g
description POPTRDRAFT_821042; hypothetical protein
nr
ID XP_002313661.2
description hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
swissprot
ID Q55535
description Putative low molecular weight protein-tyrosine-phosphatase slr0328 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0328 PE=3 SV=1
trembl
ID B9HQV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14920g PE=4 SV=2
Gene Ontology
ID GO:0004725
description low molecular weight phosphotyrosine protein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_090 0.0 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
2 Hb_003124_060 0.1158430125 - - Beta-ureidopropionase, putative [Ricinus communis]
3 Hb_132998_010 0.1960280477 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
4 Hb_000281_230 0.2043893102 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
5 Hb_115940_010 0.2141085742 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
6 Hb_006342_020 0.2214087049 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004635_060 0.2308091475 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
8 Hb_003784_050 0.2323606532 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
9 Hb_092820_020 0.2380688709 - - ATP binding protein, putative [Ricinus communis]
10 Hb_006745_060 0.2387264863 - - -
11 Hb_021888_060 0.2405296879 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
12 Hb_000286_090 0.2419809196 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
13 Hb_004223_260 0.2445832894 - - hypothetical protein F383_09277 [Gossypium arboreum]
14 Hb_000819_070 0.245676436 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
15 Hb_001159_200 0.2485022644 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
16 Hb_004209_030 0.2509413828 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
17 Hb_000906_130 0.2524444918 - - -
18 Hb_001434_070 0.2545866928 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
19 Hb_004734_050 0.2556798596 - - -
20 Hb_002918_040 0.2562986211 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001163_090 Hb_001163_090 Hb_003124_060 Hb_003124_060 Hb_001163_090--Hb_003124_060 Hb_132998_010 Hb_132998_010 Hb_001163_090--Hb_132998_010 Hb_000281_230 Hb_000281_230 Hb_001163_090--Hb_000281_230 Hb_115940_010 Hb_115940_010 Hb_001163_090--Hb_115940_010 Hb_006342_020 Hb_006342_020 Hb_001163_090--Hb_006342_020 Hb_004635_060 Hb_004635_060 Hb_001163_090--Hb_004635_060 Hb_003124_060--Hb_000281_230 Hb_000906_130 Hb_000906_130 Hb_003124_060--Hb_000906_130 Hb_003124_060--Hb_006342_020 Hb_004734_050 Hb_004734_050 Hb_003124_060--Hb_004734_050 Hb_003124_060--Hb_115940_010 Hb_000286_090 Hb_000286_090 Hb_132998_010--Hb_000286_090 Hb_021888_060 Hb_021888_060 Hb_132998_010--Hb_021888_060 Hb_000230_030 Hb_000230_030 Hb_132998_010--Hb_000230_030 Hb_002289_090 Hb_002289_090 Hb_132998_010--Hb_002289_090 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_001159_200 Hb_001159_200 Hb_000281_230--Hb_001159_200 Hb_000281_230--Hb_004635_060 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000819_070 Hb_000819_070 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260 Hb_115940_010--Hb_006342_020 Hb_073866_010 Hb_073866_010 Hb_115940_010--Hb_073866_010 Hb_156182_010 Hb_156182_010 Hb_115940_010--Hb_156182_010 Hb_005054_270 Hb_005054_270 Hb_115940_010--Hb_005054_270 Hb_006342_020--Hb_005054_270 Hb_000084_320 Hb_000084_320 Hb_006342_020--Hb_000084_320 Hb_006342_020--Hb_001159_200 Hb_000592_060 Hb_000592_060 Hb_006342_020--Hb_000592_060 Hb_003376_290 Hb_003376_290 Hb_006342_020--Hb_003376_290 Hb_004635_060--Hb_000819_070 Hb_004474_010 Hb_004474_010 Hb_004635_060--Hb_004474_010 Hb_006351_110 Hb_006351_110 Hb_004635_060--Hb_006351_110 Hb_003349_070 Hb_003349_070 Hb_004635_060--Hb_003349_070 Hb_004635_060--Hb_004223_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.255604 0.338757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88107 2.76 1.25124 1.09809 0.831468

CAGE analysis