Hb_003376_290

Information

Type -
Description -
Location Contig3376: 199249-200816
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22880g
description POPTRDRAFT_822559; Vacuolar ATP synthase subunit G 2 family protein
nr
ID XP_002316363.1
description hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
swissprot
ID Q9SP55
description V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1
trembl
ID B9HUE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22880g PE=4 SV=1
Gene Ontology
ID GO:0016471
description v-type proton atpase subunit g 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_290 0.0 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
2 Hb_001434_070 0.1116714424 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
3 Hb_004209_030 0.1314271158 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
4 Hb_004545_130 0.1347323388 - - uncharacterized protein LOC100305465 [Glycine max]
5 Hb_001307_210 0.1493194859 - - Os02g0814700 [Oryza sativa Japonica Group]
6 Hb_000635_080 0.1559944944 - - 60S ribosomal protein L17A [Hevea brasiliensis]
7 Hb_005000_180 0.156516188 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
8 Hb_001377_380 0.1572742537 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
9 Hb_000163_210 0.1613609402 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
10 Hb_007254_080 0.1621109528 - - -
11 Hb_004567_020 0.1658388219 - - Small ubiquitin-related modifier 2 [Morus notabilis]
12 Hb_000260_200 0.1666582379 - - -
13 Hb_002248_100 0.1675516997 - - hypothetical protein VITISV_027197 [Vitis vinifera]
14 Hb_001240_020 0.1708844402 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
15 Hb_000061_130 0.1721867188 - - rotamase, putative [Ricinus communis]
16 Hb_011377_020 0.1725085312 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
17 Hb_147752_010 0.1726398936 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
18 Hb_000454_180 0.1728304765 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
19 Hb_000302_290 0.1738850184 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
20 Hb_006588_080 0.1753911484 - - hypothetical protein JCGZ_25746 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_290 Hb_003376_290 Hb_001434_070 Hb_001434_070 Hb_003376_290--Hb_001434_070 Hb_004209_030 Hb_004209_030 Hb_003376_290--Hb_004209_030 Hb_004545_130 Hb_004545_130 Hb_003376_290--Hb_004545_130 Hb_001307_210 Hb_001307_210 Hb_003376_290--Hb_001307_210 Hb_000635_080 Hb_000635_080 Hb_003376_290--Hb_000635_080 Hb_005000_180 Hb_005000_180 Hb_003376_290--Hb_005000_180 Hb_001434_070--Hb_004209_030 Hb_000260_200 Hb_000260_200 Hb_001434_070--Hb_000260_200 Hb_001434_070--Hb_000635_080 Hb_001434_070--Hb_004545_130 Hb_000172_420 Hb_000172_420 Hb_001434_070--Hb_000172_420 Hb_001377_380 Hb_001377_380 Hb_004209_030--Hb_001377_380 Hb_004209_030--Hb_000260_200 Hb_004209_030--Hb_004545_130 Hb_004209_030--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_004209_030--Hb_000780_210 Hb_004545_130--Hb_000635_080 Hb_004545_130--Hb_001377_380 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_001449_090 Hb_001449_090 Hb_001307_210--Hb_001449_090 Hb_011377_020 Hb_011377_020 Hb_001307_210--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_001307_210--Hb_103118_020 Hb_003020_330 Hb_003020_330 Hb_001307_210--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_001307_210--Hb_006588_080 Hb_012395_130 Hb_012395_130 Hb_001307_210--Hb_012395_130 Hb_000635_080--Hb_001377_380 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_000635_080--Hb_006588_080 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_062135_020 Hb_062135_020 Hb_005000_180--Hb_062135_020 Hb_000163_210 Hb_000163_210 Hb_005000_180--Hb_000163_210 Hb_000302_290 Hb_000302_290 Hb_005000_180--Hb_000302_290 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.09137 0.814478 6.63172 4.27656 2.56189 1.62142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0719 67.3441 17.689 20.3747 7.46785

CAGE analysis