Hb_006342_020

Information

Type -
Description -
Location Contig6342: 30400-35345
Sequence    

Annotation

kegg
ID rcu:RCOM_1443950
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002512799.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGU0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1443950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51885: 30344-34882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006342_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_005054_270 0.1638622996 - - -
3 Hb_115940_010 0.1760981589 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
4 Hb_000084_320 0.1854729597 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
5 Hb_001159_200 0.1890259816 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
6 Hb_000592_060 0.1979162847 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
7 Hb_003376_290 0.2022226977 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
8 Hb_003124_060 0.2059993096 - - Beta-ureidopropionase, putative [Ricinus communis]
9 Hb_000281_230 0.2135295905 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
10 Hb_062135_020 0.2141282129 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
11 Hb_004209_030 0.2171026311 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
12 Hb_000302_290 0.2178635005 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
13 Hb_004064_020 0.2182217448 - - hypothetical protein M569_06853, partial [Genlisea aurea]
14 Hb_007254_080 0.2205003217 - - -
15 Hb_003784_050 0.2205255511 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
16 Hb_001163_090 0.2214087049 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
17 Hb_003913_050 0.2224767922 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_001096_030 0.2229997471 - - uridylate kinase plant, putative [Ricinus communis]
19 Hb_004545_130 0.2231746789 - - uncharacterized protein LOC100305465 [Glycine max]
20 Hb_002518_290 0.224037564 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]

Gene co-expression network

sample Hb_006342_020 Hb_006342_020 Hb_005054_270 Hb_005054_270 Hb_006342_020--Hb_005054_270 Hb_115940_010 Hb_115940_010 Hb_006342_020--Hb_115940_010 Hb_000084_320 Hb_000084_320 Hb_006342_020--Hb_000084_320 Hb_001159_200 Hb_001159_200 Hb_006342_020--Hb_001159_200 Hb_000592_060 Hb_000592_060 Hb_006342_020--Hb_000592_060 Hb_003376_290 Hb_003376_290 Hb_006342_020--Hb_003376_290 Hb_001123_100 Hb_001123_100 Hb_005054_270--Hb_001123_100 Hb_000302_290 Hb_000302_290 Hb_005054_270--Hb_000302_290 Hb_005144_110 Hb_005144_110 Hb_005054_270--Hb_005144_110 Hb_001780_140 Hb_001780_140 Hb_005054_270--Hb_001780_140 Hb_006738_030 Hb_006738_030 Hb_005054_270--Hb_006738_030 Hb_073866_010 Hb_073866_010 Hb_115940_010--Hb_073866_010 Hb_156182_010 Hb_156182_010 Hb_115940_010--Hb_156182_010 Hb_001163_090 Hb_001163_090 Hb_115940_010--Hb_001163_090 Hb_003124_060 Hb_003124_060 Hb_115940_010--Hb_003124_060 Hb_115940_010--Hb_005054_270 Hb_000836_130 Hb_000836_130 Hb_000084_320--Hb_000836_130 Hb_001348_120 Hb_001348_120 Hb_000084_320--Hb_001348_120 Hb_010931_050 Hb_010931_050 Hb_000084_320--Hb_010931_050 Hb_000784_030 Hb_000784_030 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_001369_400 Hb_001369_400 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_000318_490 Hb_000318_490 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_002704_050 Hb_002704_050 Hb_000592_060--Hb_002704_050 Hb_000431_160 Hb_000431_160 Hb_000592_060--Hb_000431_160 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000592_060--Hb_000281_230 Hb_004545_130 Hb_004545_130 Hb_000592_060--Hb_004545_130 Hb_001434_070 Hb_001434_070 Hb_003376_290--Hb_001434_070 Hb_004209_030 Hb_004209_030 Hb_003376_290--Hb_004209_030 Hb_003376_290--Hb_004545_130 Hb_001307_210 Hb_001307_210 Hb_003376_290--Hb_001307_210 Hb_000635_080 Hb_000635_080 Hb_003376_290--Hb_000635_080 Hb_005000_180 Hb_005000_180 Hb_003376_290--Hb_005000_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.287161 0.111601 0.495367 0.73004 0.150119 0.227341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3992 18.699 11.3178 5.2737 4.28631

CAGE analysis