Hb_115940_010

Information

Type -
Description -
Location Contig115940: 1558-3103
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04010g
description POPTRDRAFT_711792; putative auxin-amidohydrolase precursor family protein
nr
ID XP_002303219.1
description putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
swissprot
ID O04373
description IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2
trembl
ID B9GVN2
description Putative auxin-amidohydrolase family protein OS=Populus trichocarpa GN=POPTR_0003s04010g PE=4 SV=1
Gene Ontology
ID GO:0016787
description iaa-amino acid hydrolase ilr1-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115940_010 0.0 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
2 Hb_006342_020 0.1760981589 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_073866_010 0.2002427815 - - PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
4 Hb_156182_010 0.2006272603 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
5 Hb_001163_090 0.2141085742 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
6 Hb_003124_060 0.2231763253 - - Beta-ureidopropionase, putative [Ricinus communis]
7 Hb_005054_270 0.2233669034 - - -
8 Hb_000084_320 0.2325551303 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
9 Hb_001366_070 0.2367144596 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
10 Hb_001153_020 0.236963002 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
11 Hb_002918_040 0.2384499218 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_003784_050 0.239381168 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
13 Hb_003376_290 0.2404072412 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
14 Hb_009644_040 0.2428066811 - - PREDICTED: protein SKIP34 [Jatropha curcas]
15 Hb_002112_010 0.2430048021 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
16 Hb_001348_120 0.257102421 - - Phloem protein 2-B10, putative [Theobroma cacao]
17 Hb_000906_130 0.2612901376 - - -
18 Hb_002286_010 0.2615984575 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
19 Hb_000252_110 0.2636253855 - - -
20 Hb_004209_030 0.2644010514 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_115940_010 Hb_115940_010 Hb_006342_020 Hb_006342_020 Hb_115940_010--Hb_006342_020 Hb_073866_010 Hb_073866_010 Hb_115940_010--Hb_073866_010 Hb_156182_010 Hb_156182_010 Hb_115940_010--Hb_156182_010 Hb_001163_090 Hb_001163_090 Hb_115940_010--Hb_001163_090 Hb_003124_060 Hb_003124_060 Hb_115940_010--Hb_003124_060 Hb_005054_270 Hb_005054_270 Hb_115940_010--Hb_005054_270 Hb_006342_020--Hb_005054_270 Hb_000084_320 Hb_000084_320 Hb_006342_020--Hb_000084_320 Hb_001159_200 Hb_001159_200 Hb_006342_020--Hb_001159_200 Hb_000592_060 Hb_000592_060 Hb_006342_020--Hb_000592_060 Hb_003376_290 Hb_003376_290 Hb_006342_020--Hb_003376_290 Hb_009644_040 Hb_009644_040 Hb_073866_010--Hb_009644_040 Hb_002918_040 Hb_002918_040 Hb_073866_010--Hb_002918_040 Hb_073866_010--Hb_006342_020 Hb_000252_110 Hb_000252_110 Hb_073866_010--Hb_000252_110 Hb_073866_010--Hb_156182_010 Hb_001366_070 Hb_001366_070 Hb_156182_010--Hb_001366_070 Hb_006738_030 Hb_006738_030 Hb_156182_010--Hb_006738_030 Hb_021888_070 Hb_021888_070 Hb_156182_010--Hb_021888_070 Hb_002918_050 Hb_002918_050 Hb_156182_010--Hb_002918_050 Hb_001163_090--Hb_003124_060 Hb_132998_010 Hb_132998_010 Hb_001163_090--Hb_132998_010 Hb_000281_230 Hb_000281_230 Hb_001163_090--Hb_000281_230 Hb_001163_090--Hb_006342_020 Hb_004635_060 Hb_004635_060 Hb_001163_090--Hb_004635_060 Hb_003124_060--Hb_000281_230 Hb_000906_130 Hb_000906_130 Hb_003124_060--Hb_000906_130 Hb_003124_060--Hb_006342_020 Hb_004734_050 Hb_004734_050 Hb_003124_060--Hb_004734_050 Hb_001123_100 Hb_001123_100 Hb_005054_270--Hb_001123_100 Hb_000302_290 Hb_000302_290 Hb_005054_270--Hb_000302_290 Hb_005144_110 Hb_005144_110 Hb_005054_270--Hb_005144_110 Hb_001780_140 Hb_001780_140 Hb_005054_270--Hb_001780_140 Hb_005054_270--Hb_006738_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.547344 0.989332 0 0.319209 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.54197 10.0276 5.72002 4.95667 3.33969

CAGE analysis