Hb_005054_270

Information

Type -
Description -
Location Contig5054: 203465-205911
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 025_F10r.ab1: 201990-203089

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005054_270 0.0 - - -
2 Hb_006342_020 0.1638622996 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001123_100 0.1713836583 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
4 Hb_000302_290 0.1987343551 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
5 Hb_005144_110 0.2015055709 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
6 Hb_001780_140 0.2028197156 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_006738_030 0.2062378173 - - Ras-related protein Rab7 [Morus notabilis]
8 Hb_023344_050 0.2066405991 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
9 Hb_004162_180 0.2094327107 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000140_360 0.2101574632 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
11 Hb_000084_320 0.213427819 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
12 Hb_062135_020 0.2159120654 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
13 Hb_025645_030 0.2162925256 - - -
14 Hb_007943_190 0.2172540331 - - cytoplasmic dynein light chain, putative [Ricinus communis]
15 Hb_001240_020 0.2218219847 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
16 Hb_001153_020 0.2230750564 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
17 Hb_115940_010 0.2233669034 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
18 Hb_147752_010 0.2280555885 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
19 Hb_013893_010 0.2287532193 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
20 Hb_002042_080 0.229067157 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005054_270 Hb_005054_270 Hb_006342_020 Hb_006342_020 Hb_005054_270--Hb_006342_020 Hb_001123_100 Hb_001123_100 Hb_005054_270--Hb_001123_100 Hb_000302_290 Hb_000302_290 Hb_005054_270--Hb_000302_290 Hb_005144_110 Hb_005144_110 Hb_005054_270--Hb_005144_110 Hb_001780_140 Hb_001780_140 Hb_005054_270--Hb_001780_140 Hb_006738_030 Hb_006738_030 Hb_005054_270--Hb_006738_030 Hb_115940_010 Hb_115940_010 Hb_006342_020--Hb_115940_010 Hb_000084_320 Hb_000084_320 Hb_006342_020--Hb_000084_320 Hb_001159_200 Hb_001159_200 Hb_006342_020--Hb_001159_200 Hb_000592_060 Hb_000592_060 Hb_006342_020--Hb_000592_060 Hb_003376_290 Hb_003376_290 Hb_006342_020--Hb_003376_290 Hb_000140_360 Hb_000140_360 Hb_001123_100--Hb_000140_360 Hb_004162_180 Hb_004162_180 Hb_001123_100--Hb_004162_180 Hb_005162_100 Hb_005162_100 Hb_001123_100--Hb_005162_100 Hb_001102_210 Hb_001102_210 Hb_001123_100--Hb_001102_210 Hb_001123_100--Hb_006738_030 Hb_001240_020 Hb_001240_020 Hb_000302_290--Hb_001240_020 Hb_005000_180 Hb_005000_180 Hb_000302_290--Hb_005000_180 Hb_062135_020 Hb_062135_020 Hb_000302_290--Hb_062135_020 Hb_000061_130 Hb_000061_130 Hb_000302_290--Hb_000061_130 Hb_147752_010 Hb_147752_010 Hb_000302_290--Hb_147752_010 Hb_002518_290 Hb_002518_290 Hb_000302_290--Hb_002518_290 Hb_000059_010 Hb_000059_010 Hb_005144_110--Hb_000059_010 Hb_005144_110--Hb_000140_360 Hb_002774_110 Hb_002774_110 Hb_005144_110--Hb_002774_110 Hb_000815_290 Hb_000815_290 Hb_005144_110--Hb_000815_290 Hb_001171_050 Hb_001171_050 Hb_005144_110--Hb_001171_050 Hb_012053_060 Hb_012053_060 Hb_001780_140--Hb_012053_060 Hb_001780_140--Hb_000084_320 Hb_000771_130 Hb_000771_130 Hb_001780_140--Hb_000771_130 Hb_012053_040 Hb_012053_040 Hb_001780_140--Hb_012053_040 Hb_000479_080 Hb_000479_080 Hb_001780_140--Hb_000479_080 Hb_000928_130 Hb_000928_130 Hb_006738_030--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_006738_030--Hb_002026_120 Hb_006738_030--Hb_001240_020 Hb_003849_270 Hb_003849_270 Hb_006738_030--Hb_003849_270 Hb_006738_030--Hb_147752_010 Hb_006738_020 Hb_006738_020 Hb_006738_030--Hb_006738_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.156047 0.181697 0.463514 0.139559 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39874 3.70792 2.69201 1.2791 0.987163

CAGE analysis