Hb_012053_060

Information

Type -
Description -
Location Contig12053: 57378-64006
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15270g
description POPTRDRAFT_200186; hypothetical protein
nr
ID XP_012076172.1
description PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
swissprot
ID Q9FYC8
description BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2
trembl
ID A0A067KRA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11237 PE=4 SV=1
Gene Ontology
ID GO:0005515
description btb poz domain-containing protein at3g44820-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06381: 59522-59969 , PASA_asmbl_06382: 57737-61775 , PASA_asmbl_06383: 61001-61321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_060 0.0 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
2 Hb_000538_180 0.1532859183 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
3 Hb_001780_140 0.1722949798 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_002046_070 0.1734146153 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
5 Hb_004032_260 0.1841721362 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
6 Hb_117807_010 0.2070923561 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
7 Hb_000140_360 0.2073245196 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
8 Hb_006573_180 0.2149995199 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
9 Hb_002078_440 0.2389348563 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
10 Hb_005489_100 0.240820806 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000172_570 0.2433567771 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
12 Hb_010931_050 0.2439092495 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
13 Hb_001123_100 0.2441157815 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
14 Hb_000141_030 0.2465454756 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
15 Hb_000130_110 0.2479537958 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
16 Hb_001369_450 0.2518911065 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_000771_130 0.2522160562 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_005060_020 0.2527225788 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
19 Hb_009005_050 0.2533228891 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
20 Hb_005224_010 0.253851683 - - glycine-rich protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_012053_060 Hb_012053_060 Hb_000538_180 Hb_000538_180 Hb_012053_060--Hb_000538_180 Hb_001780_140 Hb_001780_140 Hb_012053_060--Hb_001780_140 Hb_002046_070 Hb_002046_070 Hb_012053_060--Hb_002046_070 Hb_004032_260 Hb_004032_260 Hb_012053_060--Hb_004032_260 Hb_117807_010 Hb_117807_010 Hb_012053_060--Hb_117807_010 Hb_000140_360 Hb_000140_360 Hb_012053_060--Hb_000140_360 Hb_000538_180--Hb_117807_010 Hb_000130_110 Hb_000130_110 Hb_000538_180--Hb_000130_110 Hb_000538_180--Hb_000140_360 Hb_008760_010 Hb_008760_010 Hb_000538_180--Hb_008760_010 Hb_009005_050 Hb_009005_050 Hb_000538_180--Hb_009005_050 Hb_000084_320 Hb_000084_320 Hb_001780_140--Hb_000084_320 Hb_005054_270 Hb_005054_270 Hb_001780_140--Hb_005054_270 Hb_000771_130 Hb_000771_130 Hb_001780_140--Hb_000771_130 Hb_012053_040 Hb_012053_040 Hb_001780_140--Hb_012053_040 Hb_000479_080 Hb_000479_080 Hb_001780_140--Hb_000479_080 Hb_002046_070--Hb_004032_260 Hb_006573_180 Hb_006573_180 Hb_002046_070--Hb_006573_180 Hb_023732_040 Hb_023732_040 Hb_002046_070--Hb_023732_040 Hb_000990_060 Hb_000990_060 Hb_002046_070--Hb_000990_060 Hb_000077_060 Hb_000077_060 Hb_002046_070--Hb_000077_060 Hb_001369_450 Hb_001369_450 Hb_004032_260--Hb_001369_450 Hb_012545_050 Hb_012545_050 Hb_004032_260--Hb_012545_050 Hb_017434_050 Hb_017434_050 Hb_004032_260--Hb_017434_050 Hb_005224_010 Hb_005224_010 Hb_004032_260--Hb_005224_010 Hb_000170_120 Hb_000170_120 Hb_117807_010--Hb_000170_120 Hb_012163_020 Hb_012163_020 Hb_117807_010--Hb_012163_020 Hb_117807_010--Hb_000140_360 Hb_000815_290 Hb_000815_290 Hb_117807_010--Hb_000815_290 Hb_000340_310 Hb_000340_310 Hb_117807_010--Hb_000340_310 Hb_002026_120 Hb_002026_120 Hb_117807_010--Hb_002026_120 Hb_001102_210 Hb_001102_210 Hb_000140_360--Hb_001102_210 Hb_002078_440 Hb_002078_440 Hb_000140_360--Hb_002078_440 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_000140_360--Hb_002026_120 Hb_000140_360--Hb_000815_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.480336 3.03885 3.21283 2.91464 0.140639 0.0234572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78793 14.8992 33.6912 4.77848 2.63874

CAGE analysis