Hb_006573_180

Information

Type transcription factor
Description TF Family: WRKY
Location Contig6573: 125544-127285
Sequence    

Annotation

kegg
ID rcu:RCOM_1581940
description hypothetical protein
nr
ID XP_002513635.1
description hypothetical protein RCOM_1581940 [Ricinus communis]
swissprot
ID Q9FLX8
description Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1
trembl
ID B9RIR6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581940 PE=4 SV=1
Gene Ontology
ID GO:0050794
description probable wrky transcription factor 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_180 0.0 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
2 Hb_002046_070 0.1850917801 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
3 Hb_004032_260 0.2121667841 - - PREDICTED: uncharacterized protein LOC105635147 [Jatropha curcas]
4 Hb_012053_060 0.2149995199 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
5 Hb_000141_030 0.2377880815 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
6 Hb_000172_570 0.243830565 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
7 Hb_023732_040 0.2453392507 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000963_140 0.2583077513 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000477_080 0.2651136612 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
10 Hb_001369_450 0.2696898001 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_001587_210 0.271068024 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
12 Hb_006153_080 0.2739252519 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
13 Hb_001159_080 0.2753770911 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
14 Hb_001277_090 0.2761037649 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
15 Hb_003642_050 0.2798945347 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
16 Hb_005060_020 0.2802066473 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
17 Hb_030458_010 0.2803913667 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_011360_080 0.2838074924 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_003032_100 0.2838431819 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
20 Hb_000227_200 0.2839177142 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]

Gene co-expression network

sample Hb_006573_180 Hb_006573_180 Hb_002046_070 Hb_002046_070 Hb_006573_180--Hb_002046_070 Hb_004032_260 Hb_004032_260 Hb_006573_180--Hb_004032_260 Hb_012053_060 Hb_012053_060 Hb_006573_180--Hb_012053_060 Hb_000141_030 Hb_000141_030 Hb_006573_180--Hb_000141_030 Hb_000172_570 Hb_000172_570 Hb_006573_180--Hb_000172_570 Hb_023732_040 Hb_023732_040 Hb_006573_180--Hb_023732_040 Hb_002046_070--Hb_004032_260 Hb_002046_070--Hb_012053_060 Hb_002046_070--Hb_023732_040 Hb_000990_060 Hb_000990_060 Hb_002046_070--Hb_000990_060 Hb_000077_060 Hb_000077_060 Hb_002046_070--Hb_000077_060 Hb_001369_450 Hb_001369_450 Hb_004032_260--Hb_001369_450 Hb_004032_260--Hb_012053_060 Hb_012545_050 Hb_012545_050 Hb_004032_260--Hb_012545_050 Hb_017434_050 Hb_017434_050 Hb_004032_260--Hb_017434_050 Hb_005224_010 Hb_005224_010 Hb_004032_260--Hb_005224_010 Hb_000538_180 Hb_000538_180 Hb_012053_060--Hb_000538_180 Hb_001780_140 Hb_001780_140 Hb_012053_060--Hb_001780_140 Hb_117807_010 Hb_117807_010 Hb_012053_060--Hb_117807_010 Hb_000140_360 Hb_000140_360 Hb_012053_060--Hb_000140_360 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_002073_120 Hb_002073_120 Hb_000172_570--Hb_002073_120 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000995_070 Hb_000995_070 Hb_000172_570--Hb_000995_070 Hb_000784_040 Hb_000784_040 Hb_000172_570--Hb_000784_040 Hb_000477_080 Hb_000477_080 Hb_023732_040--Hb_000477_080 Hb_023732_040--Hb_000172_570 Hb_001277_090 Hb_001277_090 Hb_023732_040--Hb_001277_090 Hb_004460_010 Hb_004460_010 Hb_023732_040--Hb_004460_010 Hb_009314_010 Hb_009314_010 Hb_023732_040--Hb_009314_010 Hb_000094_130 Hb_000094_130 Hb_023732_040--Hb_000094_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.950641 1.23166 0.218222 1.28496 0 0.0343009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48508 2.64054 9.93829 0.32627 0.440761

CAGE analysis