Hb_011282_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig11282: 26759-41569
Sequence    

Annotation

kegg
ID rcu:RCOM_1448120
description hypothetical protein
nr
ID XP_002512944.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O94481
description Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdp1 PE=3 SV=2
trembl
ID B9RH85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1448120 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03869: 26684-27115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011282_020 0.0 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
2 Hb_001660_100 0.1140991633 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
3 Hb_000329_800 0.1198313435 - - conserved hypothetical protein [Ricinus communis]
4 Hb_121729_010 0.1321397426 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000260_630 0.1324212794 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
6 Hb_111036_010 0.1333112102 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
7 Hb_002439_010 0.1343481487 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
8 Hb_000510_340 0.1357738871 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
9 Hb_001369_300 0.1362717964 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
10 Hb_011282_050 0.1363495544 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
11 Hb_035273_020 0.1369505475 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
12 Hb_000663_060 0.1396149394 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
13 Hb_000167_010 0.1401880348 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005000_170 0.1422295036 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
15 Hb_003159_140 0.1423605653 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000363_190 0.1441350063 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
17 Hb_003207_180 0.1443939649 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
18 Hb_000398_060 0.1460057025 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
19 Hb_005946_150 0.1461075362 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
20 Hb_003777_290 0.1463932501 - - polypyrimidine tract binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011282_020 Hb_011282_020 Hb_001660_100 Hb_001660_100 Hb_011282_020--Hb_001660_100 Hb_000329_800 Hb_000329_800 Hb_011282_020--Hb_000329_800 Hb_121729_010 Hb_121729_010 Hb_011282_020--Hb_121729_010 Hb_000260_630 Hb_000260_630 Hb_011282_020--Hb_000260_630 Hb_111036_010 Hb_111036_010 Hb_011282_020--Hb_111036_010 Hb_002439_010 Hb_002439_010 Hb_011282_020--Hb_002439_010 Hb_000260_470 Hb_000260_470 Hb_001660_100--Hb_000260_470 Hb_005271_040 Hb_005271_040 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_001369_300 Hb_001369_300 Hb_001660_100--Hb_001369_300 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_004319_080 Hb_004319_080 Hb_000329_800--Hb_004319_080 Hb_000035_470 Hb_000035_470 Hb_000329_800--Hb_000035_470 Hb_001301_150 Hb_001301_150 Hb_000329_800--Hb_001301_150 Hb_004846_220 Hb_004846_220 Hb_000329_800--Hb_004846_220 Hb_003159_140 Hb_003159_140 Hb_000329_800--Hb_003159_140 Hb_005000_170 Hb_005000_170 Hb_000329_800--Hb_005000_170 Hb_001828_150 Hb_001828_150 Hb_121729_010--Hb_001828_150 Hb_001472_100 Hb_001472_100 Hb_121729_010--Hb_001472_100 Hb_009898_050 Hb_009898_050 Hb_121729_010--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_121729_010--Hb_000110_310 Hb_001189_070 Hb_001189_070 Hb_121729_010--Hb_001189_070 Hb_008616_050 Hb_008616_050 Hb_121729_010--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_000260_630--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_000260_630--Hb_003861_060 Hb_000875_080 Hb_000875_080 Hb_000260_630--Hb_000875_080 Hb_000260_630--Hb_005271_040 Hb_000260_630--Hb_005000_170 Hb_000260_630--Hb_001472_100 Hb_000270_470 Hb_000270_470 Hb_111036_010--Hb_000270_470 Hb_111036_010--Hb_002439_010 Hb_111036_010--Hb_000875_080 Hb_003942_020 Hb_003942_020 Hb_111036_010--Hb_003942_020 Hb_003678_020 Hb_003678_020 Hb_111036_010--Hb_003678_020 Hb_002271_010 Hb_002271_010 Hb_111036_010--Hb_002271_010 Hb_000510_340 Hb_000510_340 Hb_002439_010--Hb_000510_340 Hb_000167_010 Hb_000167_010 Hb_002439_010--Hb_000167_010 Hb_002439_010--Hb_001828_180 Hb_002439_010--Hb_004319_080 Hb_003883_060 Hb_003883_060 Hb_002439_010--Hb_003883_060 Hb_002439_010--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305848 0.567467 2.00098 0.910895 0.904419 1.17536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30231 1.25256 0.805977 2.20847 1.09333

CAGE analysis