Hb_048573_010

Information

Type -
Description -
Location Contig48573: 1-742
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_002518256.1
description choline monooxygenase, putative [Ricinus communis]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID B9RWY7
description Choline monooxygenase, putative OS=Ricinus communis GN=RCOM_1706760 PE=4 SV=1
Gene Ontology
ID GO:0005506
description choline chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048573_010 0.0 - - choline monooxygenase, putative [Ricinus communis]
2 Hb_000635_260 0.1479036472 - - PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
3 Hb_002193_030 0.1622487573 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
4 Hb_012633_040 0.1727521202 - - -
5 Hb_001123_040 0.1799555312 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
6 Hb_000327_180 0.1818815877 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
7 Hb_004157_050 0.182726541 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
8 Hb_001301_110 0.1830003218 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
9 Hb_003938_120 0.1845462662 - - autophagy 9 family protein, partial [Populus trichocarpa]
10 Hb_003465_030 0.1884893626 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000483_300 0.1908302742 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
12 Hb_001195_200 0.195829126 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
13 Hb_000917_230 0.1962507224 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
14 Hb_029584_050 0.196412548 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
15 Hb_011344_190 0.1967549955 - - PREDICTED: maspardin [Jatropha curcas]
16 Hb_001910_010 0.1968055376 - - Dual specificity protein phosphatase, putative [Ricinus communis]
17 Hb_069150_010 0.1970048952 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
18 Hb_002994_030 0.1978410339 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
19 Hb_002799_070 0.1981729161 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
20 Hb_000665_100 0.1984221329 - - PREDICTED: neurochondrin [Jatropha curcas]

Gene co-expression network

sample Hb_048573_010 Hb_048573_010 Hb_000635_260 Hb_000635_260 Hb_048573_010--Hb_000635_260 Hb_002193_030 Hb_002193_030 Hb_048573_010--Hb_002193_030 Hb_012633_040 Hb_012633_040 Hb_048573_010--Hb_012633_040 Hb_001123_040 Hb_001123_040 Hb_048573_010--Hb_001123_040 Hb_000327_180 Hb_000327_180 Hb_048573_010--Hb_000327_180 Hb_004157_050 Hb_004157_050 Hb_048573_010--Hb_004157_050 Hb_000230_030 Hb_000230_030 Hb_000635_260--Hb_000230_030 Hb_000159_130 Hb_000159_130 Hb_000635_260--Hb_000159_130 Hb_002131_030 Hb_002131_030 Hb_000635_260--Hb_002131_030 Hb_011282_020 Hb_011282_020 Hb_000635_260--Hb_011282_020 Hb_099136_010 Hb_099136_010 Hb_000635_260--Hb_099136_010 Hb_001195_200 Hb_001195_200 Hb_002193_030--Hb_001195_200 Hb_000917_230 Hb_000917_230 Hb_002193_030--Hb_000917_230 Hb_002193_030--Hb_000327_180 Hb_003465_030 Hb_003465_030 Hb_002193_030--Hb_003465_030 Hb_002994_030 Hb_002994_030 Hb_002193_030--Hb_002994_030 Hb_001268_410 Hb_001268_410 Hb_002193_030--Hb_001268_410 Hb_012633_040--Hb_003465_030 Hb_000907_110 Hb_000907_110 Hb_012633_040--Hb_000907_110 Hb_000181_400 Hb_000181_400 Hb_012633_040--Hb_000181_400 Hb_007416_120 Hb_007416_120 Hb_012633_040--Hb_007416_120 Hb_000170_070 Hb_000170_070 Hb_012633_040--Hb_000170_070 Hb_000749_190 Hb_000749_190 Hb_012633_040--Hb_000749_190 Hb_001123_040--Hb_004157_050 Hb_001218_030 Hb_001218_030 Hb_001123_040--Hb_001218_030 Hb_000069_720 Hb_000069_720 Hb_001123_040--Hb_000069_720 Hb_004934_100 Hb_004934_100 Hb_001123_040--Hb_004934_100 Hb_000035_180 Hb_000035_180 Hb_001123_040--Hb_000035_180 Hb_001828_150 Hb_001828_150 Hb_001123_040--Hb_001828_150 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_000327_180--Hb_001195_200 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_003376_250 Hb_003376_250 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.78273 0.72597 0.602873 0.475277 0.627714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46758 0.896578 0.845531 0.970704 0.930987

CAGE analysis