Hb_012633_040

Information

Type -
Description -
Location Contig12633: 33905-35073
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07970: 33979-35073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012633_040 0.0 - - -
2 Hb_003465_030 0.0857274999 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000907_110 0.0910634122 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
4 Hb_000181_400 0.0913031661 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
5 Hb_007416_120 0.0938142036 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
6 Hb_000170_070 0.0953320378 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
7 Hb_000749_190 0.0967382887 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
8 Hb_000003_320 0.0981743462 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
9 Hb_003494_200 0.0983925454 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
10 Hb_012035_050 0.0990968229 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
11 Hb_000015_040 0.1036667756 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
12 Hb_031340_050 0.103880226 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
13 Hb_001876_050 0.1042235861 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
14 Hb_023732_030 0.1048297642 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
15 Hb_000003_590 0.1057540231 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
16 Hb_000680_160 0.1059339162 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
17 Hb_002078_350 0.1071904801 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
18 Hb_005188_080 0.1074311715 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_000130_410 0.1075757042 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
20 Hb_009558_030 0.1081634038 - - myb3r3, putative [Ricinus communis]

Gene co-expression network

sample Hb_012633_040 Hb_012633_040 Hb_003465_030 Hb_003465_030 Hb_012633_040--Hb_003465_030 Hb_000907_110 Hb_000907_110 Hb_012633_040--Hb_000907_110 Hb_000181_400 Hb_000181_400 Hb_012633_040--Hb_000181_400 Hb_007416_120 Hb_007416_120 Hb_012633_040--Hb_007416_120 Hb_000170_070 Hb_000170_070 Hb_012633_040--Hb_000170_070 Hb_000749_190 Hb_000749_190 Hb_012633_040--Hb_000749_190 Hb_001489_090 Hb_001489_090 Hb_003465_030--Hb_001489_090 Hb_000917_230 Hb_000917_230 Hb_003465_030--Hb_000917_230 Hb_000352_310 Hb_000352_310 Hb_003465_030--Hb_000352_310 Hb_001671_100 Hb_001671_100 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_001876_050 Hb_001876_050 Hb_003465_030--Hb_001876_050 Hb_000907_110--Hb_000181_400 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_000907_110--Hb_001357_250 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_000181_400--Hb_004324_130 Hb_003294_070 Hb_003294_070 Hb_000181_400--Hb_003294_070 Hb_000181_400--Hb_007416_120 Hb_000111_290 Hb_000111_290 Hb_000181_400--Hb_000111_290 Hb_000181_400--Hb_001876_050 Hb_007416_120--Hb_001671_100 Hb_007416_120--Hb_001876_050 Hb_007416_120--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_007416_120--Hb_000111_290 Hb_000441_200 Hb_000441_200 Hb_000170_070--Hb_000441_200 Hb_012035_050 Hb_012035_050 Hb_000170_070--Hb_012035_050 Hb_000003_590 Hb_000003_590 Hb_000170_070--Hb_000003_590 Hb_000025_640 Hb_000025_640 Hb_000170_070--Hb_000025_640 Hb_005504_060 Hb_005504_060 Hb_000170_070--Hb_005504_060 Hb_008453_030 Hb_008453_030 Hb_000170_070--Hb_008453_030 Hb_000466_140 Hb_000466_140 Hb_000749_190--Hb_000466_140 Hb_000749_190--Hb_001671_100 Hb_000392_430 Hb_000392_430 Hb_000749_190--Hb_000392_430 Hb_004567_090 Hb_004567_090 Hb_000749_190--Hb_004567_090 Hb_001314_050 Hb_001314_050 Hb_000749_190--Hb_001314_050 Hb_000111_320 Hb_000111_320 Hb_000749_190--Hb_000111_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.67814 1.95379 1.09491 1.49464 2.09908 1.74404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67415 2.4687 1.75345 2.72878 1.66929

CAGE analysis