Hb_023161_030

Information

Type -
Description -
Location Contig23161: 20055-24565
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023161_030 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_150200_010 0.216018737 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
3 Hb_004714_020 0.2165885088 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_000038_050 0.220161457 - - -
5 Hb_189003_030 0.2259852317 - - -
6 Hb_017687_010 0.2260945507 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
7 Hb_012305_080 0.2304510124 - - -
8 Hb_001496_140 0.3042298493 - - -
9 Hb_108768_010 0.3090862109 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_000576_100 0.3106129645 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_003155_060 0.3107345313 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
12 Hb_114874_010 0.3217412454 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
13 Hb_002260_260 0.3384162992 - - hypothetical protein VITISV_037667 [Vitis vinifera]
14 Hb_076226_010 0.3442047604 - - hypothetical protein VITISV_030432 [Vitis vinifera]
15 Hb_001878_030 0.3460998617 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
16 Hb_007749_030 0.3503582251 - - -
17 Hb_000613_260 0.3518466797 - - hypothetical protein VITISV_043487 [Vitis vinifera]
18 Hb_001799_220 0.3582680895 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
19 Hb_012707_020 0.3630951476 - - -
20 Hb_002536_020 0.3638608984 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]

Gene co-expression network

sample Hb_023161_030 Hb_023161_030 Hb_150200_010 Hb_150200_010 Hb_023161_030--Hb_150200_010 Hb_004714_020 Hb_004714_020 Hb_023161_030--Hb_004714_020 Hb_000038_050 Hb_000038_050 Hb_023161_030--Hb_000038_050 Hb_189003_030 Hb_189003_030 Hb_023161_030--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_023161_030--Hb_017687_010 Hb_012305_080 Hb_012305_080 Hb_023161_030--Hb_012305_080 Hb_150200_010--Hb_004714_020 Hb_114874_010 Hb_114874_010 Hb_150200_010--Hb_114874_010 Hb_108768_010 Hb_108768_010 Hb_150200_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_150200_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_150200_010--Hb_003155_060 Hb_004714_020--Hb_114874_010 Hb_004714_020--Hb_189003_030 Hb_004714_020--Hb_012305_080 Hb_004714_020--Hb_108768_010 Hb_002260_260 Hb_002260_260 Hb_000038_050--Hb_002260_260 Hb_001496_140 Hb_001496_140 Hb_000038_050--Hb_001496_140 Hb_000038_050--Hb_189003_030 Hb_000038_050--Hb_017687_010 Hb_028751_020 Hb_028751_020 Hb_000038_050--Hb_028751_020 Hb_189003_030--Hb_150200_010 Hb_189003_030--Hb_012305_080 Hb_189003_030--Hb_017687_010 Hb_017687_010--Hb_108768_010 Hb_017687_010--Hb_000576_100 Hb_017687_010--Hb_003155_060 Hb_007749_030 Hb_007749_030 Hb_017687_010--Hb_007749_030 Hb_002536_020 Hb_002536_020 Hb_017687_010--Hb_002536_020 Hb_012305_080--Hb_150200_010 Hb_012305_080--Hb_001496_140 Hb_002123_030 Hb_002123_030 Hb_012305_080--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_012305_080--Hb_012253_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00451046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0111877 0 0 0.0139506 0.0188593

CAGE analysis