Hb_012305_080

Information

Type -
Description -
Location Contig12305: 44815-45894
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_080 0.0 - - -
2 Hb_023161_030 0.2304510124 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_004714_020 0.2663832906 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
4 Hb_150200_010 0.2710279785 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
5 Hb_001496_140 0.2939054156 - - -
6 Hb_002123_030 0.3138216287 - - hypothetical protein VITISV_003767 [Vitis vinifera]
7 Hb_012253_020 0.3169152972 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_114874_010 0.3205156068 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
9 Hb_189003_030 0.3208157924 - - -
10 Hb_062671_010 0.3219761813 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_012707_020 0.3233285493 - - -
12 Hb_000038_050 0.3252809941 - - -
13 Hb_000261_300 0.3259625473 - - -
14 Hb_000028_380 0.3306789166 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
15 Hb_030370_010 0.3306872729 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
16 Hb_001799_220 0.3352075901 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
17 Hb_131872_010 0.3453312616 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_153665_010 0.346066453 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
19 Hb_033279_010 0.3499482441 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
20 Hb_092650_010 0.3506318602 - - Uncharacterized protein TCM_017953 [Theobroma cacao]

Gene co-expression network

sample Hb_012305_080 Hb_012305_080 Hb_023161_030 Hb_023161_030 Hb_012305_080--Hb_023161_030 Hb_004714_020 Hb_004714_020 Hb_012305_080--Hb_004714_020 Hb_150200_010 Hb_150200_010 Hb_012305_080--Hb_150200_010 Hb_001496_140 Hb_001496_140 Hb_012305_080--Hb_001496_140 Hb_002123_030 Hb_002123_030 Hb_012305_080--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_012305_080--Hb_012253_020 Hb_023161_030--Hb_150200_010 Hb_023161_030--Hb_004714_020 Hb_000038_050 Hb_000038_050 Hb_023161_030--Hb_000038_050 Hb_189003_030 Hb_189003_030 Hb_023161_030--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_023161_030--Hb_017687_010 Hb_004714_020--Hb_150200_010 Hb_114874_010 Hb_114874_010 Hb_004714_020--Hb_114874_010 Hb_004714_020--Hb_189003_030 Hb_108768_010 Hb_108768_010 Hb_004714_020--Hb_108768_010 Hb_150200_010--Hb_114874_010 Hb_150200_010--Hb_108768_010 Hb_000576_100 Hb_000576_100 Hb_150200_010--Hb_000576_100 Hb_003155_060 Hb_003155_060 Hb_150200_010--Hb_003155_060 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_001496_140--Hb_002123_030 Hb_016834_010 Hb_016834_010 Hb_001496_140--Hb_016834_010 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_001496_140--Hb_000038_050 Hb_002123_030--Hb_012253_020 Hb_002123_030--Hb_030370_010 Hb_002123_030--Hb_001799_220 Hb_153665_010 Hb_153665_010 Hb_002123_030--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_002123_030--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_002123_030--Hb_009042_010 Hb_012253_020--Hb_153665_010 Hb_012253_020--Hb_030370_010 Hb_012253_020--Hb_000599_070 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0377329 0 0 0 0.158537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10328 0 0 0.166584 0.313383

CAGE analysis