Hb_020411_010

Information

Type -
Description -
Location Contig20411: 16-372
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0005524
description nb-arc domain-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020411_010 0.0 - - phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_016834_010 0.2041275612 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
3 Hb_092650_010 0.2148494018 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
4 Hb_148593_010 0.2764143396 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
5 Hb_001496_140 0.2920907179 - - -
6 Hb_076226_010 0.2958124017 - - hypothetical protein VITISV_030432 [Vitis vinifera]
7 Hb_172970_010 0.3046815173 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
8 Hb_002419_030 0.3063809008 - - -
9 Hb_001496_030 0.3095210368 - - hypothetical protein CISIN_1g0170981mg, partial [Citrus sinensis]
10 Hb_004448_090 0.3096479627 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
11 Hb_004244_010 0.3169174072 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
12 Hb_003944_020 0.3183746235 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
13 Hb_012650_010 0.3193233376 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_001010_070 0.3199189116 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
15 Hb_001341_020 0.3229939097 - - Uncharacterised protein [Bordetella pertussis]
16 Hb_005396_060 0.3252464622 - - -
17 Hb_006960_010 0.3261053445 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001965_010 0.3270407956 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
19 Hb_002456_020 0.3281163901 - - Ankyrin repeat family protein [Theobroma cacao]
20 Hb_002260_260 0.3286902698 - - hypothetical protein VITISV_037667 [Vitis vinifera]

Gene co-expression network

sample Hb_020411_010 Hb_020411_010 Hb_016834_010 Hb_016834_010 Hb_020411_010--Hb_016834_010 Hb_092650_010 Hb_092650_010 Hb_020411_010--Hb_092650_010 Hb_148593_010 Hb_148593_010 Hb_020411_010--Hb_148593_010 Hb_001496_140 Hb_001496_140 Hb_020411_010--Hb_001496_140 Hb_076226_010 Hb_076226_010 Hb_020411_010--Hb_076226_010 Hb_172970_010 Hb_172970_010 Hb_020411_010--Hb_172970_010 Hb_002456_020 Hb_002456_020 Hb_016834_010--Hb_002456_020 Hb_000072_040 Hb_000072_040 Hb_016834_010--Hb_000072_040 Hb_016834_010--Hb_001496_140 Hb_016834_010--Hb_092650_010 Hb_002260_260 Hb_002260_260 Hb_016834_010--Hb_002260_260 Hb_003944_020 Hb_003944_020 Hb_092650_010--Hb_003944_020 Hb_001221_340 Hb_001221_340 Hb_092650_010--Hb_001221_340 Hb_000157_110 Hb_000157_110 Hb_092650_010--Hb_000157_110 Hb_002400_150 Hb_002400_150 Hb_092650_010--Hb_002400_150 Hb_092650_010--Hb_076226_010 Hb_003805_070 Hb_003805_070 Hb_148593_010--Hb_003805_070 Hb_006452_240 Hb_006452_240 Hb_148593_010--Hb_006452_240 Hb_001341_020 Hb_001341_020 Hb_148593_010--Hb_001341_020 Hb_000236_450 Hb_000236_450 Hb_148593_010--Hb_000236_450 Hb_011616_020 Hb_011616_020 Hb_148593_010--Hb_011616_020 Hb_005523_010 Hb_005523_010 Hb_148593_010--Hb_005523_010 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_002123_030 Hb_002123_030 Hb_001496_140--Hb_002123_030 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_000038_050 Hb_000038_050 Hb_001496_140--Hb_000038_050 Hb_069147_010 Hb_069147_010 Hb_076226_010--Hb_069147_010 Hb_033908_010 Hb_033908_010 Hb_076226_010--Hb_033908_010 Hb_076226_010--Hb_001799_220 Hb_030885_010 Hb_030885_010 Hb_076226_010--Hb_030885_010 Hb_087161_010 Hb_087161_010 Hb_076226_010--Hb_087161_010 Hb_012180_030 Hb_012180_030 Hb_172970_010--Hb_012180_030 Hb_002419_030 Hb_002419_030 Hb_172970_010--Hb_002419_030 Hb_004448_090 Hb_004448_090 Hb_172970_010--Hb_004448_090 Hb_000959_090 Hb_000959_090 Hb_172970_010--Hb_000959_090 Hb_002141_040 Hb_002141_040 Hb_172970_010--Hb_002141_040 Hb_012180_040 Hb_012180_040 Hb_172970_010--Hb_012180_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139252 0 0 0.249545 0.313028 1.62954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250587 0 0.302947 1.90888 1.98907

CAGE analysis