Hb_076226_010

Information

Type -
Description -
Location Contig76226: 32-661
Sequence    

Annotation

kegg
ID tcc:TCM_040215
description hypothetical protein
nr
ID CAN81526.1
description hypothetical protein VITISV_030432 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BVL8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076226_010 0.0 - - hypothetical protein VITISV_030432 [Vitis vinifera]
2 Hb_069147_010 0.2250844889 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
3 Hb_033908_010 0.2381741605 - - -
4 Hb_001799_220 0.250175281 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
5 Hb_092650_010 0.2631229643 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
6 Hb_030885_010 0.2645255219 - - -
7 Hb_087161_010 0.2687263771 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_002025_090 0.2729706314 - - unnamed protein product [Coffea canephora]
9 Hb_010810_070 0.276509275 - - serine/threonine kinase, putative [Ricinus communis]
10 Hb_030370_010 0.2784222852 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
11 Hb_095835_010 0.2791580421 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
12 Hb_000117_150 0.281954683 - - hypothetical protein RCOM_0079810 [Ricinus communis]
13 Hb_004052_060 0.2821256794 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
14 Hb_060658_010 0.282537318 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_125116_020 0.2849763496 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
16 Hb_000811_090 0.2864499219 - - hypothetical protein VITISV_043745 [Vitis vinifera]
17 Hb_002123_030 0.2906570974 - - hypothetical protein VITISV_003767 [Vitis vinifera]
18 Hb_000832_350 0.2913175666 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_095937_010 0.2915109411 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
20 Hb_001496_050 0.2922977661 - - yth domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_076226_010 Hb_076226_010 Hb_069147_010 Hb_069147_010 Hb_076226_010--Hb_069147_010 Hb_033908_010 Hb_033908_010 Hb_076226_010--Hb_033908_010 Hb_001799_220 Hb_001799_220 Hb_076226_010--Hb_001799_220 Hb_092650_010 Hb_092650_010 Hb_076226_010--Hb_092650_010 Hb_030885_010 Hb_030885_010 Hb_076226_010--Hb_030885_010 Hb_087161_010 Hb_087161_010 Hb_076226_010--Hb_087161_010 Hb_004052_060 Hb_004052_060 Hb_069147_010--Hb_004052_060 Hb_009848_060 Hb_009848_060 Hb_069147_010--Hb_009848_060 Hb_000414_180 Hb_000414_180 Hb_069147_010--Hb_000414_180 Hb_185058_020 Hb_185058_020 Hb_069147_010--Hb_185058_020 Hb_041813_050 Hb_041813_050 Hb_069147_010--Hb_041813_050 Hb_044380_020 Hb_044380_020 Hb_069147_010--Hb_044380_020 Hb_033908_010--Hb_087161_010 Hb_033908_010--Hb_069147_010 Hb_033908_010--Hb_041813_050 Hb_033908_010--Hb_004052_060 Hb_033908_010--Hb_030885_010 Hb_030370_010 Hb_030370_010 Hb_001799_220--Hb_030370_010 Hb_002123_030 Hb_002123_030 Hb_001799_220--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000832_350 Hb_000832_350 Hb_001799_220--Hb_000832_350 Hb_000599_070 Hb_000599_070 Hb_001799_220--Hb_000599_070 Hb_020411_010 Hb_020411_010 Hb_092650_010--Hb_020411_010 Hb_003944_020 Hb_003944_020 Hb_092650_010--Hb_003944_020 Hb_001221_340 Hb_001221_340 Hb_092650_010--Hb_001221_340 Hb_000157_110 Hb_000157_110 Hb_092650_010--Hb_000157_110 Hb_002400_150 Hb_002400_150 Hb_092650_010--Hb_002400_150 Hb_030885_010--Hb_009848_060 Hb_010129_020 Hb_010129_020 Hb_030885_010--Hb_010129_020 Hb_001856_280 Hb_001856_280 Hb_030885_010--Hb_001856_280 Hb_029727_010 Hb_029727_010 Hb_030885_010--Hb_029727_010 Hb_125116_020 Hb_125116_020 Hb_030885_010--Hb_125116_020 Hb_002529_070 Hb_002529_070 Hb_030885_010--Hb_002529_070 Hb_087161_010--Hb_030885_010 Hb_087161_010--Hb_009848_060 Hb_087161_010--Hb_004052_060 Hb_087161_010--Hb_041813_050 Hb_008055_030 Hb_008055_030 Hb_087161_010--Hb_008055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.204633 0 0.288256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.093983 0 0.130093 1.26882 1.87242

CAGE analysis