Hb_002400_150

Information

Type -
Description -
Location Contig2400: 117291-131645
Sequence    

Annotation

kegg
ID rcu:RCOM_0557140
description hypothetical protein
nr
ID XP_012092341.1
description PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22010 PE=4 SV=1
Gene Ontology
ID GO:0005634
description sequence-specific dna -specific dna binding transcription isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25158: 123926-131968
cDNA
(Sanger)
(ID:Location)		 001_C22.ab1: 124526-131968

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_150 0.0 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
2 Hb_004339_030 0.2029497606 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
3 Hb_003581_290 0.2106020485 - - PREDICTED: UDP-galactose/UDP-glucose transporter 3 [Fragaria vesca subsp. vesca]
4 Hb_000256_110 0.2126061381 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
5 Hb_003057_010 0.2141475869 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
6 Hb_029879_060 0.2142276918 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
7 Hb_000008_350 0.2160304266 - - -
8 Hb_000328_050 0.2255491364 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
9 Hb_000157_110 0.2282142132 - - hypothetical protein Csa_6G439410 [Cucumis sativus]
10 Hb_000739_210 0.2341019111 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
11 Hb_008147_080 0.2354925231 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
12 Hb_001578_020 0.236432839 - - Protein virR, putative [Ricinus communis]
13 Hb_082793_010 0.2378701812 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000635_260 0.2393583118 - - PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
15 Hb_008375_010 0.2409186278 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
16 Hb_001117_200 0.2419075355 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
17 Hb_000896_050 0.2422209442 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
18 Hb_032258_010 0.2427157814 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
19 Hb_016219_010 0.2427176945 - - hypothetical protein B456_001G213800 [Gossypium raimondii]
20 Hb_009078_030 0.2429861565 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]

Gene co-expression network

sample Hb_002400_150 Hb_002400_150 Hb_004339_030 Hb_004339_030 Hb_002400_150--Hb_004339_030 Hb_003581_290 Hb_003581_290 Hb_002400_150--Hb_003581_290 Hb_000256_110 Hb_000256_110 Hb_002400_150--Hb_000256_110 Hb_003057_010 Hb_003057_010 Hb_002400_150--Hb_003057_010 Hb_029879_060 Hb_029879_060 Hb_002400_150--Hb_029879_060 Hb_000008_350 Hb_000008_350 Hb_002400_150--Hb_000008_350 Hb_004339_030--Hb_003581_290 Hb_010288_060 Hb_010288_060 Hb_004339_030--Hb_010288_060 Hb_008147_080 Hb_008147_080 Hb_004339_030--Hb_008147_080 Hb_004339_030--Hb_000008_350 Hb_000739_210 Hb_000739_210 Hb_004339_030--Hb_000739_210 Hb_008375_010 Hb_008375_010 Hb_004339_030--Hb_008375_010 Hb_029920_030 Hb_029920_030 Hb_003581_290--Hb_029920_030 Hb_000816_200 Hb_000816_200 Hb_003581_290--Hb_000816_200 Hb_003581_290--Hb_008147_080 Hb_003581_290--Hb_000008_350 Hb_000058_080 Hb_000058_080 Hb_003581_290--Hb_000058_080 Hb_000256_110--Hb_000739_210 Hb_014497_060 Hb_014497_060 Hb_000256_110--Hb_014497_060 Hb_000922_260 Hb_000922_260 Hb_000256_110--Hb_000922_260 Hb_000668_110 Hb_000668_110 Hb_000256_110--Hb_000668_110 Hb_003490_050 Hb_003490_050 Hb_000256_110--Hb_003490_050 Hb_001405_080 Hb_001405_080 Hb_000256_110--Hb_001405_080 Hb_000631_070 Hb_000631_070 Hb_003057_010--Hb_000631_070 Hb_002131_030 Hb_002131_030 Hb_003057_010--Hb_002131_030 Hb_001595_080 Hb_001595_080 Hb_003057_010--Hb_001595_080 Hb_000230_030 Hb_000230_030 Hb_003057_010--Hb_000230_030 Hb_000703_270 Hb_000703_270 Hb_003057_010--Hb_000703_270 Hb_002304_070 Hb_002304_070 Hb_003057_010--Hb_002304_070 Hb_001623_500 Hb_001623_500 Hb_029879_060--Hb_001623_500 Hb_001143_100 Hb_001143_100 Hb_029879_060--Hb_001143_100 Hb_000085_070 Hb_000085_070 Hb_029879_060--Hb_000085_070 Hb_001832_200 Hb_001832_200 Hb_029879_060--Hb_001832_200 Hb_004109_260 Hb_004109_260 Hb_029879_060--Hb_004109_260 Hb_001390_100 Hb_001390_100 Hb_029879_060--Hb_001390_100 Hb_001677_220 Hb_001677_220 Hb_000008_350--Hb_001677_220 Hb_000008_350--Hb_008375_010 Hb_000008_350--Hb_008147_080 Hb_000008_350--Hb_000816_200 Hb_003124_120 Hb_003124_120 Hb_000008_350--Hb_003124_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00563744 0.15557 0.0790764 0.053045 0.108073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108714 0.0488849 0.0467045 0.252156 0.338566

CAGE analysis